RNA id: TU565851


Basic Information

Item Value
RNA id TU565851
length 275
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G493315
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12145712 ~ 12145986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTATTTAGGCATTATTTTAGCAAACTTGCATTAATGTCTAGCATCATTTTGGTATGTATTGCCCTTTTTTTTTTTTAATTGAATCAATTCCTAGTTAATAATATCAAGTCCTGATCTACATCTAATATCCTTTTTACAGGGAAATACATTGCACATCCAAAATGGATTGTGAACTAAATTCAAGTTGACTAAGTGAATGCTACATATCTGGTTTATTTTACAGTCCTGTTCCTAAAGTACATCCTATGTACTTATTATAGTAATTGTAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565847 lncRNA downstream 11459 12133171 ~ 12134253 (-) True G493311
TU565845 lncRNA downstream 14637 12130634 ~ 12131075 (-) True G493309
TU565794 lncRNA downstream 36103 12105647 ~ 12109609 (-) False G493266
TU565799 lncRNA downstream 58972 12022932 ~ 12086740 (-) True G493267
TU565800 lncRNA downstream 120456 12024496 ~ 12025256 (-) True G493268
TU565866 lncRNA upstream 47485 12193471 ~ 12193797 (-) True G493330
TU565946 lncRNA upstream 168114 12314100 ~ 12314301 (-) True G493402
TU565947 lncRNA upstream 168418 12314404 ~ 12314623 (-) True G493403
TU566515 lncRNA upstream 208142 12354128 ~ 12375232 (-) True G493893
TU566517 lncRNA upstream 208832 12354818 ~ 12355089 (-) True G493894
CI01000340_11903883_11956886.mRNA mRNA downstream 188826 11903780 ~ 11956886 (-) True CI01000340_11903883_11956886
CI01000340_11779096_11787055.mRNA mRNA downstream 356953 11779091 ~ 11788759 (-) True CI01000340_11779096_11787055
CI01000340_11695434_11705476.mRNA mRNA downstream 439914 11694675 ~ 11705798 (-) True CI01000340_11695434_11705476
CI01000340_11679110_11679311.mRNA mRNA downstream 466401 11678836 ~ 11679311 (-) True CI01000340_11679110_11679311
CI01000340_11609366_11648905.mRNA mRNA downstream 496807 11609366 ~ 11648905 (-) True CI01000340_11609366_11648905
CI01000340_12515377_12519838.mRNA mRNA upstream 368760 12514746 ~ 12519980 (-) True CI01000340_12515377_12519838
CI01000340_12532321_12545278.mRNA mRNA upstream 386253 12532239 ~ 12545388 (-) True CI01000340_12532321_12545278
CI01000340_12562841_12563343.mRNA mRNA upstream 416607 12562593 ~ 12563343 (-) True CI01000340_12562841_12563343
CI01000340_12571142_12574655.mRNA mRNA upstream 425035 12571021 ~ 12574678 (-) True CI01000340_12571142_12574655
CI01000340_12577571_12625562.mRNA mRNA upstream 431449 12577435 ~ 12625758 (-) False CI01000340_12577571_12625562
TU565795 other downstream 28812 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 39461 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 467718 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 1783308 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 2117729 10021892 ~ 10027983 (-) True G491883
TU566559 other upstream 466230 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 2067362 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 2067362 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 2172379 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 2401013 14548727 ~ 14548779 (-) False G494879

Expression Profile