RNA id: TU565946


Basic Information

Item Value
RNA id TU565946
length 202
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G493402
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12314100 ~ 12314301 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAAGCAGGAGAATTAGTAATGAGTAAATGTTTGCTTACCTTTATTGTAGAAAAGCCTAAATTCAATCTGTTCATCATACAAAGCCATCGTGTCTCTTCAGAAAATTTGGACTAAACCACTCAATTCATATGGATTAGTTTTACAATCTCTTTATAAGCTTTTTGAAGCATCAAAGTGGTAGTCACGTAGCTGTCAATGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565866 lncRNA downstream 120303 12193471 ~ 12193797 (-) True G493330
TU565851 lncRNA downstream 168114 12145712 ~ 12145986 (-) True G493315
TU565847 lncRNA downstream 179847 12133171 ~ 12134253 (-) True G493311
TU565845 lncRNA downstream 183025 12130634 ~ 12131075 (-) True G493309
TU565794 lncRNA downstream 204491 12105647 ~ 12109609 (-) False G493266
TU565947 lncRNA upstream 103 12314404 ~ 12314623 (-) True G493403
TU566515 lncRNA upstream 39827 12354128 ~ 12375232 (-) True G493893
TU566517 lncRNA upstream 40517 12354818 ~ 12355089 (-) True G493894
TU566525 lncRNA upstream 62946 12377247 ~ 12377503 (-) True G493901
TU566528 lncRNA upstream 76706 12391007 ~ 12391331 (-) True G493904
CI01000340_11903883_11956886.mRNA mRNA downstream 357214 11903780 ~ 11956886 (-) True CI01000340_11903883_11956886
CI01000340_11779096_11787055.mRNA mRNA downstream 525341 11779091 ~ 11788759 (-) True CI01000340_11779096_11787055
CI01000340_11695434_11705476.mRNA mRNA downstream 608302 11694675 ~ 11705798 (-) True CI01000340_11695434_11705476
CI01000340_11679110_11679311.mRNA mRNA downstream 634789 11678836 ~ 11679311 (-) True CI01000340_11679110_11679311
CI01000340_11609366_11648905.mRNA mRNA downstream 665195 11609366 ~ 11648905 (-) True CI01000340_11609366_11648905
CI01000340_12515377_12519838.mRNA mRNA upstream 200445 12514746 ~ 12519980 (-) True CI01000340_12515377_12519838
CI01000340_12532321_12545278.mRNA mRNA upstream 217938 12532239 ~ 12545388 (-) True CI01000340_12532321_12545278
CI01000340_12562841_12563343.mRNA mRNA upstream 248292 12562593 ~ 12563343 (-) True CI01000340_12562841_12563343
CI01000340_12571142_12574655.mRNA mRNA upstream 256720 12571021 ~ 12574678 (-) True CI01000340_12571142_12574655
CI01000340_12577571_12625562.mRNA mRNA upstream 263134 12577435 ~ 12625758 (-) False CI01000340_12577571_12625562
TU565795 other downstream 197200 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 207849 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 636106 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 1951696 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 2286117 10021892 ~ 10027983 (-) True G491883
TU566559 other upstream 297915 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 1899047 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 1899047 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 2004064 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 2232698 14548727 ~ 14548779 (-) False G494879

Expression Profile