RNA id: TCONS_00020516


Basic Information

Item Value
RNA id TCONS_00020516
length 1035
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_010443
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8047896 ~ 8132742 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGGAATCAAGCGCGGGTATGACGGGAAGATCGCCGGACTGTATGACCTGGACAAGACATTGGGCCGCGGGCATTTCGCCGTCGTCAAACTAGCACGTCATGTCTTCACCGGTGAAAAAGTGGCAGTCAAGGTAATAGACAAGACCAAGCTTGACACGGTCGCGACCGGTCACCTCTTCCAGGAAGTCCGCTGTATGAAACTGGTCCAACATCCCAACATCGTTCGGCTCTATGAGGTCATCGACACACAGACCAAACTCTACCTGATCTTAGAGCTCGGCGATGGTGGCGACATGTTCGATTACATCATGAAGCACGAAGAGGGACTGAACGAAGAACTGGCCAAGAAATATTTTGCGCAGATTGTGCACGCCATCTCATACTGTCACCGCTTACACGTGGTTCATCGTGACCTAAAGCCAGAGAATGTGGTGTTCTTTGAGAAACAGGGCCTGGTCAAGCTCACCGACTTCGGCTTCAGTAATAAGTTCCAGCCAGGAAAGAAGCTGACCACCAGCTGTGGCTCGCTGGCTTATTCTGCCCCTGAGATCTTGCTGGGAGATGAGTACGATGCACCTGCTGtggATATCTGGAGTCTCGGGGTCATCCTCTTCATGCTGGTGTGCGGTCAACCCCCCTTCCAGGAGGCCAATGACAGCGAGACCCTCACTATGATTATGGACTGCAAATACACTGTACCTGCCCACGTCTCAAATGCTTGCAAAGACCTGATAAACCGAATGCTTCAAAGGGATCCAAAGAGGCGAGCATCGCTGGAGGAGATTGAGAGCCACGCGTGGCTTCAAGGGGTGGATCCATCTCCAGCCACCAAATACAACACTCCTCTGGTGTCTCATAAGAATCTTTCTGAAGAGGAACACAACAGCATCATCCAGCGCATGGTCCTGGGAGATATCGCAGATAGAGAAGCCATCGTCGATTTCAGgaacacaagtacccaatttcaacagTCTTTGAAAAACATTATTTGCTACAGCTTTTatttcacTTGCACCCttgtcaaacacacc

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-84 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within phosphorylation. Orthologous to human SNRK (SNF related kinase).

Ensembl:

ensembl_id ENSDART00000193430

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020515 lncRNA downstream 62995 7968221 ~ 7984901 (-) True XLOC_010442
TCONS_00021784 lncRNA downstream 64113 7968024 ~ 7983783 (-) False XLOC_010442
TCONS_00020514 lncRNA downstream 73959 7968020 ~ 7973937 (-) False XLOC_010442
TCONS_00022114 lncRNA downstream 166619 7834219 ~ 7881277 (-) False XLOC_010441
TCONS_00020513 lncRNA downstream 166644 7856500 ~ 7881252 (-) True XLOC_010441
TCONS_00021785 lncRNA upstream 20509 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020523 lncRNA upstream 180621 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00022115 lncRNA upstream 431586 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00022116 lncRNA upstream 548778 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020539 lncRNA upstream 1320818 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020509 mRNA downstream 219048 7802730 ~ 7828848 (-) False XLOC_010440
TCONS_00020512 mRNA downstream 219058 7805464 ~ 7828838 (-) True XLOC_010440
TCONS_00020511 mRNA downstream 220379 7805464 ~ 7827517 (-) False XLOC_010440
TCONS_00020510 mRNA downstream 220531 7805464 ~ 7827365 (-) False XLOC_010440
TCONS_00020508 mRNA downstream 254439 7742658 ~ 7793457 (-) True XLOC_010439
TCONS_00020518 mRNA upstream 67985 8188188 ~ 8217495 (-) False XLOC_010445
TCONS_00020519 mRNA upstream 67985 8188188 ~ 8251985 (-) True XLOC_010445
TCONS_00020520 mRNA upstream 138000 8258203 ~ 8280885 (-) True XLOC_010446
TCONS_00020522 mRNA upstream 178339 8298542 ~ 8342749 (-) False XLOC_010448
TCONS_00020524 mRNA upstream 243882 8364085 ~ 8520474 (-) False XLOC_010449
TCONS_00020507 other downstream 351680 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 351685 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020500 other downstream 819617 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020493 other downstream 1218261 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020473 other downstream 2177207 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020521 other upstream 167568 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020525 other upstream 252062 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 358677 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020535 other upstream 1181876 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020559 other upstream 2135004 10255207 ~ 10261625 (-) True XLOC_010469

Expression Profile

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