RNA id: TU566534


Basic Information

Item Value
RNA id TU566534
length 338
lncRNA type intronic
GC content 0.37
exon number 1
gene id G493910
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12420208 ~ 12420545 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATGGACAAAGCAGATCTTCAAAATATCTTCTTTTGCATTTTCACATGATTTGAGTTATCAATCATGTCTGTAGCACAAACAGTGTGATCCAAGCTTAACACTAAGGCTTAAAGGTTTTTAAGGATTTCTTTACTAAAGATTGCATTGTGTTTAAAAACTCACTGACAGACCTCAATCACAAAACATCAAATCTATAATCACCAGCAATGTAATTTTACGACGTTTTAACAGATTGGGAGTAAAGATGAGGACAAAATCAATGAGTCCCTCCAAACAGAAGAGTGCTCCTGCCCAACTGTGGTGGTGTTTTGCTAAGCGTGAGCCACACATGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566533 lncRNA downstream 1774 12418193 ~ 12418434 (-) True G493909
TU566532 lncRNA downstream 3012 12416958 ~ 12417196 (-) True G493908
TU566531 lncRNA downstream 10167 12409822 ~ 12410041 (-) True G493907
TU566530 lncRNA downstream 11538 12408346 ~ 12408670 (-) True G493906
TU566529 lncRNA downstream 22091 12397803 ~ 12398117 (-) True G493905
TU566541 lncRNA upstream 16921 12437466 ~ 12437726 (-) True G493917
TU566542 lncRNA upstream 17213 12437758 ~ 12437987 (-) True G493918
TU566543 lncRNA upstream 22938 12443483 ~ 12443735 (-) True G493919
TU566544 lncRNA upstream 23971 12444516 ~ 12444717 (-) True G493920
TU566586 lncRNA upstream 25698 12446243 ~ 12446442 (-) True G493955
CI01000340_11903883_11956886.mRNA mRNA downstream 463322 11903780 ~ 11956886 (-) True CI01000340_11903883_11956886
CI01000340_11779096_11787055.mRNA mRNA downstream 631449 11779091 ~ 11788759 (-) True CI01000340_11779096_11787055
CI01000340_11695434_11705476.mRNA mRNA downstream 714410 11694675 ~ 11705798 (-) True CI01000340_11695434_11705476
CI01000340_11679110_11679311.mRNA mRNA downstream 740897 11678836 ~ 11679311 (-) True CI01000340_11679110_11679311
CI01000340_11609366_11648905.mRNA mRNA downstream 771303 11609366 ~ 11648905 (-) True CI01000340_11609366_11648905
CI01000340_12515377_12519838.mRNA mRNA upstream 94201 12514746 ~ 12519980 (-) True CI01000340_12515377_12519838
CI01000340_12532321_12545278.mRNA mRNA upstream 111694 12532239 ~ 12545388 (-) True CI01000340_12532321_12545278
CI01000340_12562841_12563343.mRNA mRNA upstream 142048 12562593 ~ 12563343 (-) True CI01000340_12562841_12563343
CI01000340_12571142_12574655.mRNA mRNA upstream 150476 12571021 ~ 12574678 (-) True CI01000340_12571142_12574655
CI01000340_12577571_12625562.mRNA mRNA upstream 156890 12577435 ~ 12625758 (-) False CI01000340_12577571_12625562
TU565795 other downstream 303308 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 313957 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 742214 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 2057804 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 2392225 10021892 ~ 10027983 (-) True G491883
TU566559 other upstream 191671 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 1792803 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 1792803 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 1897820 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 2126454 14548727 ~ 14548779 (-) False G494879

Expression Profile