RNA id: TU566727


Basic Information

Item Value
RNA id TU566727
length 250
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G494076
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13086112 ~ 13086361 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACTTCCAGAGACCAGTATGAGAGAGTGAGAGCGATAACACCAAATTTAACACACCTGCTCCCCATTCACACATGAGACCTTGTAACACTAACAAGTCACGTGACACCAGGGAGAGAAAATGGCTAATTGAGCCCAATTTGGACATTTTTACGTAGGGGTGTACTCACTTTTGTGACATCACTGGCTGTGTGTTGAGTTATTTTGAGGGGACAGCAAATTTACACTGTTATACAAGCTGTACACTCACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566649 lncRNA downstream 183759 12902147 ~ 12902353 (-) True G494014
TU566640 lncRNA downstream 259955 12825666 ~ 12826157 (-) True G494005
TU566570 lncRNA downstream 273923 12760791 ~ 12812189 (-) True G493939
TU566573 lncRNA downstream 325539 12760227 ~ 12760573 (-) True G493942
TU566621 lncRNA downstream 372133 12713627 ~ 12713979 (-) True G493987
TU566749 lncRNA upstream 398436 13484797 ~ 13485714 (-) False G494096
TU566748 lncRNA upstream 398795 13485156 ~ 13485714 (-) True G494096
TU566684 lncRNA upstream 594913 13681274 ~ 13684384 (-) True G494045
TU566871 lncRNA upstream 842032 13928393 ~ 13928654 (-) True G494203
TU566880 lncRNA upstream 849697 13936058 ~ 13936413 (-) True G494210
CI01000340_13055639_13078780.mRNA mRNA downstream 7332 13055170 ~ 13078780 (-) True CI01000340_13055639_13078780
CI01000340_13040679_13050661.mRNA mRNA downstream 35451 13040679 ~ 13050661 (-) True CI01000340_13040679_13050661
CI01000340_13012739_13028824.mRNA mRNA downstream 57025 13012410 ~ 13029087 (-) True CI01000340_13012739_13028824
CI01000340_13000573_13007186.mRNA mRNA downstream 78926 12999598 ~ 13007186 (-) True CI01000340_13000573_13007186
CI01000340_12981561_12992400.mRNA mRNA downstream 93712 12981347 ~ 12992400 (-) True CI01000340_12981561_12992400
CI01000340_13123870_13230976.mRNA mRNA upstream 37509 13123870 ~ 13230976 (-) True CI01000340_13123870_13230976
CI01000340_13278282_13284505.mRNA mRNA upstream 191774 13278135 ~ 13284802 (-) True CI01000340_13278282_13284505
CI01000340_13333604_13339477.mRNA mRNA upstream 247146 13333507 ~ 13341001 (-) True CI01000340_13333604_13339477
CI01000340_13350921_13376832.mRNA mRNA upstream 264450 13350811 ~ 13377534 (-) True CI01000340_13350921_13376832
CI01000340_13387485_13391568.mRNA mRNA upstream 299968 13386329 ~ 13391568 (-) True CI01000340_13387485_13391568
TU566559 other downstream 412587 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 969212 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 979861 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 1408118 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 2723708 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 1126987 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 1126987 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 1232004 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 1460638 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 1460638 14548727 ~ 14555168 (-) True G494879

Expression Profile