RNA id: TCONS_00020519


Basic Information

Item Value
RNA id TCONS_00020519
length 3331
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_010445
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8188188 ~ 8251985 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTCCAAACCTCCACTCCGCTTTCCTTCTCAAGTCCAACGTGTTGCTGGAGATCAGAGCTTTGTTCTGAGACGTTGCAGACTTTGCATTGGAAACTGAAGAATAAGCCAATGGAAAGTTGCTAAACAATGACTTTGGATGCATCTCACGTGTACACTAATCCAGTTAAGATGAGAGCAACTTCAAGAAGGCTGAAGTGGTGGAATAATAGCCTGTTTACATGGATGAGGAGTGCAGGAATGAAGATGATGTGGCACTGATGCTGCGATTCGAGCAGAAGCTGCACGTTGACACTAGTGTTTGCAATGGCTTTAAGGCTGTGCATGAAGCTCAGACTGAAATGTCGGTTTGTGGTGGCCTTCCTGTTTCTCTTCAGCCTGTCAGTGGCGATAATATACACCCTTCCTCCATTCCAATCCGAGCAGATCAGAGCGAACGTACGAGGCCCTCGCAATAACAAACCTAGCAAGCTATTGGAGAAGTGGTCTCTGAGACCGTATAAGAAGCTTCCAGGCAAATCCTTGAAGAACCCTGAAATGAAAGATTCCGCTAAACATCTCCTGATGTTCAGTCATTTCCATCAAACGTTTTCCTCTGGAAAAATAGCTGAAGGAAAAGCATCAACCAAGAAGCCTTCAAGCAAACAATATATGAAGAATCCAAACAAACATCCAATCAAGTCATTCCGAGGCAGTGCCAAAAGGGCGCAAGCTGTTAGACTTCGAAATAGCAGCAGCTCCAACACAACCATCCATCTCCTTCGCTCCAGACATGACCAAGCATTCCCTCATTCCGCCAGCATCCGGAGCCTCCGCCCAAATAACAAGACATGCAGGCACAAATGCACTCCAGATGGGGACAAAGTAGAGAGGATTGTAGGCCACTTCTCCGATGCACAGCAGGTGGTAAAACTGAAACAAGCCCCTAGAGAAGCAGGAGCACATGAAAGACAAGCTGGGCCCTCTGAGAGGAAGAGGCCCAAATTTAAAACAGAAAGAGAGGCTGAGGCTGGCATCAGTGACTGGTGTAAGACTTTAAATGAAAGCTGGAACCAAACCAAAGCAGAGTCTCTCCCCTGGTTCAGTGCGGATGATATAAAGAAGATGGCACTTCTCTCCAGAGGCACTGTTGTGAGTAAAGCCCGGCTTCCCGGCCATGGACAAGTACTTCAAGTCGGATTAAGCGATAAAAATGACACCTTTGCATCTGCAGGTCATCTCAAACGCTGCCAGAAAGAAAGCTGCGCTCTCATAAAACGCCCTAATGACTGGTCTGAAGTGTTCGCCTTTCACCTGGACAGAGTTTTAGGTCTGAATCGGAGCTTGCCCGCAGTGTTAAGAGCATTTCACAGTGAGATTCTACCTTACAAATACACATCTGGATCTCCCAGACCGGTGGTATGGTGGGATCCTAGCATCCAACATCTGTCTGATGCTGAGAACGACCAGAACTCTTTCTCACTCACCTGGCCAGAATATCAGGCTCTGCTCAAGAGCAGATGTGGAATTCAGGTCCCGCTGAACTTCACCACATGTGTGGGAGTTCATCATTCAGAGTGGGGGCGACTGGCCTTGTTTGACTTCCTGCTGCAGGTTAATGACAGACTGGACCGGTCTTGCTGTGGTTTCAGAGCAGATCCATCCGATCTGTGTATTGAAAACCTGCTGCATGTCAAATGTGGAAACCCAAAGGACTTAAATCTGGTGCACATTCTGGTTCGGAAGACAGAACCATCCAAACTGGTTTTTATTGATAATGCAGGAAGACCTCATCAACCACATGACAATTTAAACTTCAGACTGGTTGAAGGTATTGATGAGTTTCCTGAGAAGGCTGTTTCAGTTCTGCAGTCGGGATGTCTGGAGAAGATGCTCCTTCACTCCCTGTCTGTGGATCAGGAATTCTGGCTGAGCAGAGAAGAGGCGTCCGGACTTAAATCCCTCATCCAGCACACAGAACAAAGAGCCAAGGCCTTGCTCCGGCACATACAAGAGAAGAATCTTCGGTTAAACAGAGATCTATAACTCTCTGATGTTGGAAATAACCAAATAATGAATTCCCAGATGACAGGAACATTAATGGAATTAATTTCAATCGTCTAAATTCATTTATATGCTTGTCTCAAATATGTTTGCTGTGCTGTTTAGAAAGTCAAGCAAAGCATGTTAGTTGGCTGAAATAAGAGGAAGCAGTATATTTGCATGGATTTTTGAGGCGATTTCCCTAATCAGACTTGACAGTCCTTGAACTGTGATTAACTGATGCTCTCAGTGTCTGAGAGAAGAAATCCCAGATGGTCATTTGCAGAGCAGGACTCATGTAGAGGGCCATCACTGTGAAGAGACCTGCACCATGTCCTAACCAgatacaatgcaaaaaaaaaaatcaacacaagctatttttttattttagtgctaAAAGTAAATGTGCTGTTTGACTGGACACTCAAACATggtgtcctaacaacatgtgaCGAAACAATATTACATTgacaagcaacacacacacacacacacacacacacacacacacacaaatgattcaaactactaatttaaaatgagctgtaacaacaattcttgagtgtttttaaacaatttaattgtcgtATGTTTAATGCAAGATGGGAACCTAATCTATTTGGGTTGGcataacatgaatgaattgtgtggaaccctgcatttgatgacaaaagcatttaaatgtcaacCATTCAAAAGCACTATACTCCTAACAAATGTGTTTAGaatctaatgaataagtattaAATtgcattaacattattaaaagtacattgCTGAGTAACTTATGTTGTTGGTTTGCACCGAATCAGCactagcattcattcattcactctttaCTTGCTAGTTATATTATTTTCCAGATCTGGGGTAAATTATCTGCTGGCATTTTCAGTACGGCAATAAAAGTCTCATAAAATGTGAATCAACCTCATACTGGTAACATTTAGTGCAGAATAAAGCACGTATTTAGTATCTGAGGTGGTGTTATCATTGTAGTTTAGCCACAGTGTCACATGAATTGAAATGGCTTTTAAAATAGAACCTCTGCACATCGCCATCACAGATAGTTTAGGCAATACAAATTATTTGaagatattttatatttaatgcacAGTTATAAGGACTTGACTAAAGAAAGGACAGGGTTACCTATGTGTGCAAAACCTTTCTTGAGAAGTGGGACAAACAAGGTGGGAAATAAAACACTCCaaacattttatcattttatcaaaaaatatttatcatttgaaTTTTGTCTTGGAAAAAAAGTTGTATGTAAgatttttgggtaacactttagaataac

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-121130-2 Predicted to be located in Golgi apparatus and membrane. Orthologous to human GASK1A (golgi associated kinase 1A).

Ensembl:

ensembl_id ENSDART00000109302

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021785 lncRNA downstream 45876 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020515 lncRNA downstream 203287 7968221 ~ 7984901 (-) True XLOC_010442
TCONS_00021784 lncRNA downstream 204405 7968024 ~ 7983783 (-) False XLOC_010442
TCONS_00020514 lncRNA downstream 214251 7968020 ~ 7973937 (-) False XLOC_010442
TCONS_00020513 lncRNA downstream 306936 7856500 ~ 7881252 (-) True XLOC_010441
TCONS_00020523 lncRNA upstream 48839 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00022115 lncRNA upstream 299804 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00022116 lncRNA upstream 416996 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020539 lncRNA upstream 1189036 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020541 lncRNA upstream 1312518 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020517 mRNA downstream 55446 8051261 ~ 8132742 (-) True XLOC_010443
TCONS_00020516 mRNA downstream 67985 8047896 ~ 8120203 (-) False XLOC_010443
TCONS_00020512 mRNA downstream 359350 7805464 ~ 7828838 (-) True XLOC_010440
TCONS_00020511 mRNA downstream 360671 7805464 ~ 7827517 (-) False XLOC_010440
TCONS_00020510 mRNA downstream 360823 7805464 ~ 7827365 (-) False XLOC_010440
TCONS_00020520 mRNA upstream 6218 8258203 ~ 8280885 (-) True XLOC_010446
TCONS_00020522 mRNA upstream 46557 8298542 ~ 8342749 (-) False XLOC_010448
TCONS_00020524 mRNA upstream 112100 8364085 ~ 8520474 (-) False XLOC_010449
TCONS_00020529 mRNA upstream 277787 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020528 mRNA upstream 277787 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020507 other downstream 491972 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 491977 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020500 other downstream 959909 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020493 other downstream 1358553 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020473 other downstream 2317499 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020521 other upstream 35786 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020525 other upstream 120280 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 226895 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020535 other upstream 1050094 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020559 other upstream 2003222 10255207 ~ 10261625 (-) True XLOC_010469

Expression Profile

//