RNA id: TU566749


Basic Information

Item Value
RNA id TU566749
length 735
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G494096
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13484797 ~ 13485714 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCAACAGGTGACATCAGGTGGCAAACAGGTGGCAAATAGGTGTTAAAATGGAGAAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTCTGGCAAACAGTGCTTTGTTACGATTCAGGTAGCTATCATAAGCCCGATAGGATCGCAACATTCAAAGTATTTATTCCAGTTCAATCCAGTTCAATCCATCGTATTCATCACGCCGGTATGGACGGTTTGTTGAGGAACTGTGCCACTGGCTGTCGTGTCGATGAGGCCTTCACAATGGATGATCTAGTTGACTCAGTCTCTGCTGACACTTCAGGGGTGCGTTGTGGTCGTGTCAAGGCGTAGGTCCTCAATCTCACCTGGATACGGCCTGGATCCGGTTGACTCGGGATAAACAGAAAGACTAATATCAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTACATCTGGTGTTATAGGAAGTGTTCCCGGTTCCGGCTGACCTAATTTATGCAGACTAATAATCCTTTAACGGATTTGAAAAAATAAATTGATAATGTGTTATGTGTATGCCAGGTTAAAGAGATGCGTTTTTAGTCTAGATTTAAACTGACAGAGTGTGTCTGCTTCCCGAACAATGCTAGGAAGATTGTTCCAGAGTTTAGGTGCCAAACAGGAGAAGGATCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566727 lncRNA downstream 398436 13086112 ~ 13086361 (-) True G494076
TU566649 lncRNA downstream 582444 12902147 ~ 12902353 (-) True G494014
TU566640 lncRNA downstream 658640 12825666 ~ 12826157 (-) True G494005
TU566570 lncRNA downstream 672608 12760791 ~ 12812189 (-) True G493939
TU566573 lncRNA downstream 724224 12760227 ~ 12760573 (-) True G493942
TU566684 lncRNA upstream 195560 13681274 ~ 13684384 (-) True G494045
TU566871 lncRNA upstream 442679 13928393 ~ 13928654 (-) True G494203
TU566880 lncRNA upstream 450344 13936058 ~ 13936413 (-) True G494210
TU566992 lncRNA upstream 556860 14042574 ~ 14043062 (-) True G494322
TU567004 lncRNA upstream 564776 14050490 ~ 14050723 (-) True G494334
CI01000340_13466556_13478823.mRNA mRNA downstream 4364 13466446 ~ 13480433 (-) True CI01000340_13466556_13478823
CI01000340_13457239_13457881.mRNA mRNA downstream 26125 13456724 ~ 13458672 (-) True CI01000340_13457239_13457881
CI01000340_13387485_13391568.mRNA mRNA downstream 93229 13386329 ~ 13391568 (-) True CI01000340_13387485_13391568
CI01000340_13350921_13376832.mRNA mRNA downstream 107263 13350811 ~ 13377534 (-) True CI01000340_13350921_13376832
CI01000340_13333604_13339477.mRNA mRNA downstream 143796 13333507 ~ 13341001 (-) True CI01000340_13333604_13339477
CI01000340_13511512_13525933.mRNA mRNA upstream 25798 13511512 ~ 13525933 (-) True CI01000340_13511512_13525933
CI01000340_13546741_13557286.mRNA mRNA upstream 60033 13545747 ~ 13557341 (-) True CI01000340_13546741_13557286
CI01000340_13604658_13605013.mRNA mRNA upstream 118670 13604384 ~ 13605817 (-) True CI01000340_13604658_13605013
CI01000340_13619069_13627493.mRNA mRNA upstream 132657 13618371 ~ 13627493 (-) True CI01000340_13619069_13627493
CI01000340_13737144_13746426.mRNA mRNA upstream 251430 13737144 ~ 13746426 (-) True CI01000340_13737144_13746426
TU566559 other downstream 811272 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 1367897 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 1378546 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 1806803 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 3122393 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 727634 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 727634 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 832651 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 1061285 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 1061285 14548727 ~ 14555168 (-) True G494879

Expression Profile