RNA id: TU566684


Basic Information

Item Value
RNA id TU566684
length 3083
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G494045
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13681274 ~ 13684384 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATTATTATTATTATTAATATTACTGTATTTATTTCGAGGTTTAATTGTTATTATTTTTATAATTTTTAACAACTTATGATTCACTGAAACAACAATAGTTATTGCATTATTATTATCATCATGTTGTTGTATTAAATTTGTTTTTGTTTTTTTATTACAACTCACAGGGAATGGCTCAGCTCCCTCCTGGATAACAAACCCCTCGATGACATGCGTGAGGACGTGTGGCTTCACTATGGCTTGAGGTGGCTTGTTCTCGCCGTTTTGTGCCACACTTCCTGTCACAGCTGCCGGAGGCGGCTCGCTTGAGGCTGCCGAGGTCATGGTCGATGTCACCGGTGCTCCCGTGGGGTCACGCGCCGTCTCCACAGAGCCTGGCGGAAAAGAAACAAAGCATCACCATACTCAAACTCATCACCATAGCAACCACAACAACATCAGCAGCACAAATATCAGCAGTCGCCATTGTTTACGGGAAAGCCTGGAAAAGACTGCTGCTGAAAGTAAAATACAAACAGTGAGCTTATAAAGTAGTTTACGAACATTTAAGGAACAGTTAAGCCAAACATTAAAGGAAAATAATATCTCTTAAACCAGTCTGGTTTGCTGGTTTAAGATATTTATGATGATGTTTTTAGTTTTATGAATTTTTATTTCTTCTATGAAACACAAAGGGAGATATTCAGTAACATATTCATAAAAAGCGGCTATAAGAATATTTTAAAGAAAATATCGCTACAAGTACGCACAAAATGTGTTGATCAGTCAAGTGACACTTGAGAGCCAATGGCGTTTGACGTCAAAGACGTCCAACTAGAGCGGCGCCGTAAGACAGCGCCATTTTTAATTTGAACGCAACTGTCTGCCAACGGTATTTTAAACCGAAGGGAAGATTATTAGTCAATAACGACTGCAATTTCATTGTATTCCTCACACAAAGCTATTCAATAACTTCAGAATACTTTCAATATTAAAGTATGGACTACTTTTACGAAGTGTTTTAAGGTTATTCGCTGTCATTTTATGAACAAGTTGTCAAAGAAAGGACATACTGCAGTTCACTGAAGAAATGAAATATCGATGGAACGTCATAATGAGGGTAAGTAAATGATTTGATCTTGTGTGAACTATTACTTGAAGAAACATCCCACCAACGTTAGGCATCTAAAAACTTAAATCAACTAAGAAAAAGTACATCTCTCCTGTTCACACAAGATGCGTCACTGCGTTCAGACTGGCGTCAAAATGCGCGCCTCCTCGAGACCGCTTCGGTTTTCTTTTAAGCCCACTAACCAAAACTACTGGCATCACAACACAAGACATACTGTAGCTTACCGACAAAGCATAATAAAAAGTCATTTCCCGAAGGGGCGCTCTTCAATTCCGTTTCAAAACACGGGGGGAGCCTCATTCCCACACGCCTGTTTCACTGATATCAAAGACAGAATTTCCAGGCACCGCCACGCGTGCGATACTACGCAACATGCAGTGTGCGCTGCTCCTTTTCTAATGCTTCACTCCCACGCACAAGCACATTCTGCCGGAGAGGCGGTTCAGTCTTTCCCTGGATGGCAGCAGCCTCAAGTGGCAGGTCACATGACTCTGTAGAGGTTCAAGAGTCTTTCACTGGCTGGCGGCAGCGACTGTGTCCTTTATATCCCCTATATTGGGCATTATCTCAAGGTAGGTTACACCCTGGTCTAAAACCAGTTTCTGACTGATTCGGCAGGAAGGCTGCTAGTTGTGCCTTTTGGCAGTCAAGGAAGTCTACAGAGTCATGTGACTGGCCCAGAGTCAGTTCTTGTTCATATTACTGTACTCATGGGAATTGCATGCTACTTCCTCTCTTTCTTTGTTAGCAAATCTGATTCACCACATGGGAGTCGAAAGCCTTGTATTTTAAATGAAATAGTGAAAGCCGTATGTGGTATTTGATATAGTGCCCTCAGACTTTGGACATAACCCATACTTGCAATGTATGAATGTCATTGCATTAGATAACAGAATATAAAACACATTAAAGTCAGTTTTGAAATGAGATGGCATAAGCACACATTGCAAGCAAAATGCTACACATAATTTGTTTGACAATACCACTTGATTTATTTTGTGATCTAATGCATTGAAATTTATGAATTTTTTATCAAAATATTTTGGCACCCTTGCAAATTACAATTTTAACTGGTTAGTGTGCTAAACTAGTGTCTTTAGTGATTTCTTCAGAATATCCATTATAAAATATTCAGGTATAGGGATGGGTATGTTGTTTATTTGTTTACTTGGATACAAAAATTAACAGAATTTAATGTTCAGAATTCTGTCTTAATGATGTATTCATCAGGCAAGTTTGTATGTGCATATTTGTAACTGTATTTTGATAGGTGTGAAATAAACAGAAGGTTTAAGGTTTTATATGTGTATATATATATATATATATAAGAGTTAGTTTCTGTCCTTGATACTGATTGGTCAATAGCTGTGTTTTATTCATGGTAAAACACAGCTATGACCGCTTCACCCAACGGATCTGTGTATCACTACACAACACCCTTAGCAACCACTCTTAGCAACGTAAACTGTATGTTCTCAATTGATATTGTTCATTGAAGCTTACTGTATTATGTAGATCTAGAAGAGTATTGTGAGAAAGAGATTGATTGATCGAGTTTATTACCTGCTTTCAGATTTAGCATTTTCCTTCAGGTCAGTCCTATGTTCATAATAAATAATCTGTTTAAATGTCCGATGTATTATCTTGTCCTTTTAACAGTTAAGGGGATTTCCCGTGACTGACAGCGCTAGTCAAAGCATTTGTCAGCTGGTCTTGTTCTGTGTTCACAGCAATTCAGTCTTTTCAATGTAAAAGTCTTCGCTACTGAGTGGCACACTCATAAAGACAGTCTTTGCTGCCATCTAATGGCGTAATAATGTAACTTCTGTTGCTGTTCATGGTCAGGGACTATTTTTTCCGGCAGAAAAAAGGCTTTTAGTGAAAGTTTACTTCATGAAAGTTGCATTGATACATATTTTTGGCTTTAATATTGTATTGTGTGATAACCGTTTTATAAAAGCAATAAGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566749 lncRNA downstream 195560 13484797 ~ 13485714 (-) False G494096
TU566748 lncRNA downstream 195560 13485156 ~ 13485714 (-) True G494096
TU566727 lncRNA downstream 594913 13086112 ~ 13086361 (-) True G494076
TU566649 lncRNA downstream 778921 12902147 ~ 12902353 (-) True G494014
TU566640 lncRNA downstream 855117 12825666 ~ 12826157 (-) True G494005
TU566871 lncRNA upstream 244009 13928393 ~ 13928654 (-) True G494203
TU566880 lncRNA upstream 251674 13936058 ~ 13936413 (-) True G494210
TU566992 lncRNA upstream 358190 14042574 ~ 14043062 (-) True G494322
TU567004 lncRNA upstream 366106 14050490 ~ 14050723 (-) True G494334
TU567379 lncRNA upstream 385936 14070320 ~ 14070619 (-) True G494688
CI01000340_13619069_13627493.mRNA mRNA downstream 53781 13618371 ~ 13627493 (-) True CI01000340_13619069_13627493
CI01000340_13604658_13605013.mRNA mRNA downstream 75457 13604384 ~ 13605817 (-) True CI01000340_13604658_13605013
CI01000340_13546741_13557286.mRNA mRNA downstream 123933 13545747 ~ 13557341 (-) True CI01000340_13546741_13557286
CI01000340_13511512_13525933.mRNA mRNA downstream 155341 13511512 ~ 13525933 (-) True CI01000340_13511512_13525933
CI01000340_13466556_13478823.mRNA mRNA downstream 200841 13466446 ~ 13480433 (-) True CI01000340_13466556_13478823
CI01000340_13737144_13746426.mRNA mRNA upstream 52760 13737144 ~ 13746426 (-) True CI01000340_13737144_13746426
CI01000340_13748766_13759247.mRNA mRNA upstream 64382 13748766 ~ 13759690 (-) True CI01000340_13748766_13759247
CI01000340_13774456_13796883.mRNA mRNA upstream 89916 13774300 ~ 13796883 (-) True CI01000340_13774456_13796883
CI01000340_14121598_14122814.mRNA mRNA upstream 437083 14121467 ~ 14122814 (-) True CI01000340_14121598_14122814
CI01000340_14124155_14131724.mRNA mRNA upstream 439489 14123873 ~ 14131736 (-) True CI01000340_14124155_14131724
TU566559 other downstream 1007749 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 1564374 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 1575023 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 2003280 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 3318870 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 528964 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 528964 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 633981 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 862615 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 862615 14548727 ~ 14555168 (-) True G494879

Expression Profile