RNA id: TU566871


Basic Information

Item Value
RNA id TU566871
length 262
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G494203
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13928393 ~ 13928654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTCTTGTTTTTTCCCTCAAATGTCAATTAGGGGCTTTGTAGCAACTCAAATGGAATGTTGTGGCAGCCGACAAAAATGTTAAAGGCACAATATGTAATTTTAGCCACTAGAGGTCGCTTATTTAAAACAAAGGCATACCTTGATGACGGCATGAATGAGTGTGGAATCATGGGAGTTGTCGTCTTCACCTCCACAGCTGATGGAAAGCAATTTGACAGACTCGGGCAGAAATCATGTTTATGGATGAGCTAATGTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566684 lncRNA downstream 244009 13681274 ~ 13684384 (-) True G494045
TU566749 lncRNA downstream 442679 13484797 ~ 13485714 (-) False G494096
TU566748 lncRNA downstream 442679 13485156 ~ 13485714 (-) True G494096
TU566727 lncRNA downstream 842032 13086112 ~ 13086361 (-) True G494076
TU566649 lncRNA downstream 1026040 12902147 ~ 12902353 (-) True G494014
TU566880 lncRNA upstream 7404 13936058 ~ 13936413 (-) True G494210
TU566992 lncRNA upstream 113920 14042574 ~ 14043062 (-) True G494322
TU567004 lncRNA upstream 121836 14050490 ~ 14050723 (-) True G494334
TU567379 lncRNA upstream 141666 14070320 ~ 14070619 (-) True G494688
TU567387 lncRNA upstream 162324 14090978 ~ 14091221 (-) True G494696
CI01000340_13774456_13796883.mRNA mRNA downstream 131510 13774300 ~ 13796883 (-) True CI01000340_13774456_13796883
CI01000340_13748766_13759247.mRNA mRNA downstream 168703 13748766 ~ 13759690 (-) True CI01000340_13748766_13759247
CI01000340_13737144_13746426.mRNA mRNA downstream 181967 13737144 ~ 13746426 (-) True CI01000340_13737144_13746426
CI01000340_13619069_13627493.mRNA mRNA downstream 300900 13618371 ~ 13627493 (-) True CI01000340_13619069_13627493
CI01000340_13604658_13605013.mRNA mRNA downstream 322576 13604384 ~ 13605817 (-) True CI01000340_13604658_13605013
CI01000340_14121598_14122814.mRNA mRNA upstream 192813 14121467 ~ 14122814 (-) True CI01000340_14121598_14122814
CI01000340_14124155_14131724.mRNA mRNA upstream 195219 14123873 ~ 14131736 (-) True CI01000340_14124155_14131724
CI01000340_14152734_14153363.mRNA mRNA upstream 223521 14152175 ~ 14153363 (-) True CI01000340_14152734_14153363
CI01000340_14183801_14186441.mRNA mRNA upstream 254840 14183494 ~ 14186441 (-) True CI01000340_14183801_14186441
CI01000340_14255925_14261708.mRNA mRNA upstream 327103 14255757 ~ 14261753 (-) True CI01000340_14255925_14261708
TU566559 other downstream 1254868 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 1811493 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 1822142 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 2250399 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 3565989 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 284694 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 284694 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 389711 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 618345 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 618345 14548727 ~ 14555168 (-) True G494879

Expression Profile