RNA id: TU567393


Basic Information

Item Value
RNA id TU567393
length 314
lncRNA type intronic
GC content 0.46
exon number 1
gene id G494702
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 14101000 ~ 14101313 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGCTTCAAAGGGCTCTACATGATCCCAGCCGAGGAATAAGAGTCTTGTCACACATTACGTAATCACATTGGAAAGGTCACGTGTGACGTAGGCAGAAATACCGCGGTAGGGCAAAAAACTCCACCTCATTTTCTCCTCTAACTTCAAAATCGTCCGACATCTTTGATTGACCTTTTTTGTAAAGGGCGACTTAGTCTTTGCACGTTCGCTATGTAGACACTGGATCGGTACTTTCACCTACGTCACGCGTGACCTTTCCAACATGATTACGTAATGCGTGGAGCATCGCAGAGCTAGTGCAAGATGAGCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567387 lncRNA downstream 9779 14090978 ~ 14091221 (-) True G494696
TU567379 lncRNA downstream 30381 14070320 ~ 14070619 (-) True G494688
TU567004 lncRNA downstream 50277 14050490 ~ 14050723 (-) True G494334
TU566992 lncRNA downstream 57938 14042574 ~ 14043062 (-) True G494322
TU566880 lncRNA downstream 164587 13936058 ~ 13936413 (-) True G494210
TU567421 lncRNA upstream 33445 14134758 ~ 14142188 (-) True G494727
TU567473 lncRNA upstream 80153 14181466 ~ 14181972 (-) True G494779
TU567506 lncRNA upstream 181399 14282712 ~ 14284064 (-) True G494812
TU567461 lncRNA upstream 250695 14352008 ~ 14352223 (-) True G494767
TU567456 lncRNA upstream 278057 14379370 ~ 14382292 (-) True G494762
CI01000340_13774456_13796883.mRNA mRNA downstream 304117 13774300 ~ 13796883 (-) True CI01000340_13774456_13796883
CI01000340_13748766_13759247.mRNA mRNA downstream 341310 13748766 ~ 13759690 (-) True CI01000340_13748766_13759247
CI01000340_13737144_13746426.mRNA mRNA downstream 354574 13737144 ~ 13746426 (-) True CI01000340_13737144_13746426
CI01000340_13619069_13627493.mRNA mRNA downstream 473507 13618371 ~ 13627493 (-) True CI01000340_13619069_13627493
CI01000340_13604658_13605013.mRNA mRNA downstream 495183 13604384 ~ 13605817 (-) True CI01000340_13604658_13605013
CI01000340_14121598_14122814.mRNA mRNA upstream 20154 14121467 ~ 14122814 (-) True CI01000340_14121598_14122814
CI01000340_14124155_14131724.mRNA mRNA upstream 22560 14123873 ~ 14131736 (-) True CI01000340_14124155_14131724
CI01000340_14152734_14153363.mRNA mRNA upstream 50862 14152175 ~ 14153363 (-) True CI01000340_14152734_14153363
CI01000340_14183801_14186441.mRNA mRNA upstream 82181 14183494 ~ 14186441 (-) True CI01000340_14183801_14186441
CI01000340_14255925_14261708.mRNA mRNA upstream 154444 14255757 ~ 14261753 (-) True CI01000340_14255925_14261708
TU566559 other downstream 1427475 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 1984100 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 1994749 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 2423006 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 3738596 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 112035 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 112035 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 217052 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 445686 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 445686 14548727 ~ 14555168 (-) True G494879

Expression Profile