RNA id: TU567473


Basic Information

Item Value
RNA id TU567473
length 507
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G494779
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 14181466 ~ 14181972 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACATGGGGGTGAGTAAATTATCAGGAAATTTTTATTTGAAAGTGGACTAATCCTTTAAAGGGAATGCTTAAAGGCATAGTTCACCCAAAAACAGAAATTCAGTCATTGTTTATTCACCCTGTTGGCATTATAATGCCATATATCTTTTCTTTTTAAGACCCCATACGACTCATGTCATATTTTCCAAGTGTTCCGAGGGCATATGGGTTTGGTCAAAAACACATCAAAATTTAATTTATTATTTAGTGAAAATCCTGCACAATTATTTCAGAAGTATAATCATAACACCAAACATTACATGTTAGCATGACACTGGTTTGATCGAATTGCTTATCAAAAAGTTAAACCCAGTTAAACTTTGGTATTTGCACAAGAATTCCAGTAATGGACATAGAAGGAAACCAGGAATTATATTGGTAGGGCATAACCAGAACTTTATCCACCAAGAAAAGTAGTTCCACCTTAAATTGGTGGATTTTTGGCCATTTTACAGGTTACTTCATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567421 lncRNA downstream 39278 14134758 ~ 14142188 (-) True G494727
TU567393 lncRNA downstream 80153 14101000 ~ 14101313 (-) True G494702
TU567387 lncRNA downstream 90245 14090978 ~ 14091221 (-) True G494696
TU567379 lncRNA downstream 110847 14070320 ~ 14070619 (-) True G494688
TU567004 lncRNA downstream 130743 14050490 ~ 14050723 (-) True G494334
TU567506 lncRNA upstream 100740 14282712 ~ 14284064 (-) True G494812
TU567461 lncRNA upstream 170036 14352008 ~ 14352223 (-) True G494767
TU567456 lncRNA upstream 197398 14379370 ~ 14382292 (-) True G494762
TU567434 lncRNA upstream 248921 14430893 ~ 14432098 (-) True G494740
TU567423 lncRNA upstream 257394 14439366 ~ 14440204 (-) True G494729
CI01000340_14152734_14153363.mRNA mRNA downstream 28103 14152175 ~ 14153363 (-) True CI01000340_14152734_14153363
CI01000340_14124155_14131724.mRNA mRNA downstream 49730 14123873 ~ 14131736 (-) True CI01000340_14124155_14131724
CI01000340_14121598_14122814.mRNA mRNA downstream 58652 14121467 ~ 14122814 (-) True CI01000340_14121598_14122814
CI01000340_13774456_13796883.mRNA mRNA downstream 384583 13774300 ~ 13796883 (-) True CI01000340_13774456_13796883
CI01000340_13748766_13759247.mRNA mRNA downstream 421776 13748766 ~ 13759690 (-) True CI01000340_13748766_13759247
CI01000340_14183801_14186441.mRNA mRNA upstream 1522 14183494 ~ 14186441 (-) True CI01000340_14183801_14186441
CI01000340_14255925_14261708.mRNA mRNA upstream 73785 14255757 ~ 14261753 (-) True CI01000340_14255925_14261708
CI01000340_14309675_14311339.mRNA mRNA upstream 127671 14309643 ~ 14311436 (-) True CI01000340_14309675_14311339
CI01000340_14318434_14336130.mRNA mRNA upstream 136415 14318387 ~ 14336258 (-) False CI01000340_14318434_14336130
CI01000340_14384828_14388836.mRNA mRNA upstream 202120 14384092 ~ 14389433 (-) True CI01000340_14384828_14388836
TU566559 other downstream 1507941 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 2064566 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 2075215 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 2503472 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 3819062 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 31376 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 31376 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 136393 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 365027 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 365027 14548727 ~ 14555168 (-) True G494879

Expression Profile