Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00002810 |
| length | 1662 |
| lncRNA type | antisense_over |
| GC content | 0.44 |
| exon number | 2 |
| gene id | XLOC_000087 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 7672121 ~ 7674229 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0071013 | catalytic step 2 spliceosome | cellular_component |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0044451 | obsolete nucleoplasm part | cellular_component |
| GO:0044464 | obsolete cell part | cellular_component |
| GO:0000974 | Prp19 complex | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005623 | obsolete cell | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005684 | U2-type spliceosomal complex | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0036002 | pre-mRNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000171 | lncRNA | upstream | 111267 | 7556999 ~ 7560854 (+) | False | XLOC_000086 |
| TCONS_00000166 | lncRNA | upstream | 117906 | 7546683 ~ 7554215 (+) | True | XLOC_000085 |
| TCONS_00000161 | lncRNA | upstream | 132405 | 7529853 ~ 7539716 (+) | False | XLOC_000085 |
| TCONS_00000162 | lncRNA | upstream | 132405 | 7538408 ~ 7539716 (+) | False | XLOC_000085 |
| TCONS_00000159 | lncRNA | upstream | 148191 | 7517449 ~ 7523930 (+) | False | XLOC_000085 |
| TCONS_00003026 | lncRNA | downstream | 899548 | 8573777 ~ 8575057 (+) | True | XLOC_000097 |
| TCONS_00000190 | lncRNA | downstream | 901078 | 8575307 ~ 8577274 (+) | True | XLOC_000098 |
| TCONS_00000192 | lncRNA | downstream | 913001 | 8587230 ~ 8590636 (+) | False | XLOC_000100 |
| TCONS_00003027 | lncRNA | downstream | 913116 | 8587345 ~ 8590636 (+) | False | XLOC_000100 |
| TCONS_00003028 | lncRNA | downstream | 914003 | 8588232 ~ 8590636 (+) | True | XLOC_000100 |
| TCONS_00000168 | mRNA | upstream | 110899 | 7556965 ~ 7561222 (+) | False | XLOC_000086 |
| TCONS_00000170 | mRNA | upstream | 110900 | 7556977 ~ 7561221 (+) | False | XLOC_000086 |
| TCONS_00000167 | mRNA | upstream | 110987 | 7556965 ~ 7561134 (+) | False | XLOC_000086 |
| TCONS_00000169 | mRNA | upstream | 111050 | 7556977 ~ 7561071 (+) | False | XLOC_000086 |
| TCONS_00000172 | mRNA | upstream | 111107 | 7557018 ~ 7561014 (+) | False | XLOC_000086 |
| TCONS_00000174 | mRNA | downstream | 5099 | 7679328 ~ 7680108 (+) | False | XLOC_000088 |
| TCONS_00000175 | mRNA | downstream | 5099 | 7679328 ~ 7683372 (+) | True | XLOC_000088 |
| TCONS_00000176 | mRNA | downstream | 281801 | 7956030 ~ 7961696 (+) | True | XLOC_000089 |
| TCONS_00000177 | mRNA | downstream | 313823 | 7988052 ~ 7989314 (+) | True | XLOC_000090 |
| TCONS_00000178 | mRNA | downstream | 436333 | 8110562 ~ 8163167 (+) | False | XLOC_000091 |
| TCONS_00000154 | other | upstream | 608178 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000149 | other | upstream | 884317 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000134 | other | upstream | 1486589 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000123 | other | upstream | 2170037 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000121 | other | upstream | 2221677 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000208 | other | downstream | 1479865 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000209 | other | downstream | 1480764 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000213 | other | downstream | 1544419 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
| TCONS_00000230 | other | downstream | 2377545 | 10051774 ~ 10054771 (+) | False | XLOC_000126 |
| TCONS_00000231 | other | downstream | 2377555 | 10051784 ~ 10058057 (+) | False | XLOC_000126 |
