RNA id: TCONS_00020523


Basic Information

Item Value
RNA id TCONS_00020523
length 814
lncRNA type retained_intron
GC content 0.41
exon number 2
gene id XLOC_010448
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8298542 ~ 8342749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaaaacagaaatacacTGAAAACGTGAACTAAATTatagtcaagtttttttttaaacgctAAAAAGGATGAAAAAACCCCACCTGCTATATTGTAttgtaatttataaataatttttacaacTGACAATGCTATAAATGCATATTTGCTTGGCTAATGTTAATTTGAATGATTTTCAAATGATCTGCATATATCCTGTTTGCAATGTATTGTCGATCGTGTTTCAGCATGTAGGACTGGCTAAAGAGTTCGAGGCTTTCGTGAGAGCTGATCAACGCTTTGAGATCTCAGCTGATGTGGTGATGGGTCTCGTCTGCTTTAGACTCAAGGGCCCCAATGAATTAAGTGAAAATCTGCTGAAGAGGATCAACAGCGCACGGAAGATTCATCTGGTTCCTTGCCACCTGGCTGGCCTGTTTGTTCTGCGGTTTGCCGTGTGTGCCCGCGCTACTGAGTCACGTCATGTCCAGGAGGCCTGGTGCCACATCCGTCAGCTGGCATCAGAGCTGCTTCAGGAACTGCTACACTGACCATTGCAGTGGGCATCACAAttgtacactctcaaaaataaaggtatgctagttgtcactagggtggtaacttttcaaaaggtacaaatttgtacctaaaaggacCATATTAATACTTATTATATAGTTCTGAGGTACTAATATGGatccttcaagtacaaatgtgtacaaaaaggtaccaccccagtgacagctctcatacctttatttGTGAGAGTGTACCACATCTGCTTTCACACTGTCTTAATTCCCCTCTATCGCTGATTCATGCTATTTATTGGC

Function

GO:

id name namespace
GO:0042427 serotonin biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0007420 brain development biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016831 carboxy-lyase activity molecular_function
GO:0004058 aromatic-L-amino-acid decarboxylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism
ko00350 Tyrosine metabolism
ko00360 Phenylalanine metabolism
ko00380 Tryptophan metabolism
ko00901 Indole alkaloid biosynthesis
ko00950 Isoquinoline alkaloid biosynthesis
ko00965 Betalain biosynthesis
ko04728 Dopaminergic synapse
ko04726 Serotonergic synapse
ko04361 Axon regeneration
ko05030 Cocaine addiction
ko05031 Amphetamine addiction
ko05034 Alcoholism
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2656 Predicted to enable aromatic-L-amino-acid decarboxylase activity. Acts upstream of or within brain development. Predicted to be active in cytoplasm. Is expressed in digestive system; muscle; nervous system; ovary; and pharyngeal arch. Human ortholog(s) of this gene implicated in Parkinson's disease; aromatic L-amino acid decarboxylase deficiency; bipolar disorder; and inherited metabolic disorder. Orthologous to human DDC (dopa decarboxylase).

Ensembl:

ensembl_id ENSDART00000145527

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021785 lncRNA downstream 158512 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020515 lncRNA downstream 315923 7968221 ~ 7984901 (-) True XLOC_010442
TCONS_00021784 lncRNA downstream 317041 7968024 ~ 7983783 (-) False XLOC_010442
TCONS_00020514 lncRNA downstream 326887 7968020 ~ 7973937 (-) False XLOC_010442
TCONS_00022114 lncRNA downstream 419547 7834219 ~ 7881277 (-) False XLOC_010441
TCONS_00022115 lncRNA upstream 248610 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00022116 lncRNA upstream 365802 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020539 lncRNA upstream 1137842 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020541 lncRNA upstream 1261324 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00022117 lncRNA upstream 1455997 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020520 mRNA downstream 19939 8258203 ~ 8280885 (-) True XLOC_010446
TCONS_00020519 mRNA downstream 48839 8188188 ~ 8251985 (-) True XLOC_010445
TCONS_00020518 mRNA downstream 83329 8188188 ~ 8217495 (-) False XLOC_010445
TCONS_00020517 mRNA downstream 168082 8051261 ~ 8132742 (-) True XLOC_010443
TCONS_00020516 mRNA downstream 180621 8047896 ~ 8120203 (-) False XLOC_010443
TCONS_00020524 mRNA upstream 60906 8364085 ~ 8520474 (-) False XLOC_010449
TCONS_00020529 mRNA upstream 226593 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020528 mRNA upstream 226593 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020527 mRNA upstream 226593 8529772 ~ 8663552 (-) False XLOC_010451
TCONS_00020530 mRNA upstream 227452 8530631 ~ 8663493 (-) False XLOC_010451
TCONS_00020521 other downstream 12377 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 604608 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 604613 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020500 other downstream 1072545 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020493 other downstream 1471189 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020525 other upstream 69086 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 175701 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020535 other upstream 998900 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020559 other upstream 1952028 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 2526630 10829809 ~ 10837232 (-) False XLOC_010476

Expression Profile

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