RNA id: TU567578


Basic Information

Item Value
RNA id TU567578
length 405
RNA type TUCP
GC content 0.44
exon number 2
gene id G494872
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 14557623 ~ 14559023 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTCCATACTATATACCTCTCTTATTAACACGGGTAAGTAGGCAGTGAACAAAAAATAACAGCACAAATGCACAATAGAATGGCATGTGATTTACCTTTCTTCCTCCCCTCATCTTCATCAAGATCGAACTCTTTCTCCTCGCCCCCGTCAGCCTCGATCTCTTTTGTTTCCAATTGTTGGCCTTCATCTCCCTCACCACCATCTTCCTCCAGCATGAAAGGCTTCTTCTTCTTCTTCTTCTTCTTGGTCATAGTGGGATCAAATATCATCTCGTCTCCTGACATGGTTTCGACTTGTTGTGAAAACGCAAGACGCAGAAAAATAAGCGTTATAATAGACTATTCTTCACGATACACCTTTCCTCGATATGCGCGTTGCTTGCATCAGGCCGGGCGGAGCTCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567554 lncRNA downstream 14104 14542418 ~ 14543519 (-) True G494855
TU567551 lncRNA downstream 40884 14516516 ~ 14516739 (-) True CI01000340_14515689_14516087
TU567405 lncRNA downstream 41442 14515341 ~ 14516181 (-) False CI01000340_14515689_14516087
TU567413 lncRNA downstream 91695 14464258 ~ 14465928 (-) True G494719
TU567550 lncRNA downstream 110106 14447184 ~ 14447517 (-) True G494852
TU567575 lncRNA upstream 3074 14562097 ~ 14564627 (-) True G494869
TU567611 lncRNA upstream 157268 14716291 ~ 14716574 (-) True G494902
TU567573 lncRNA upstream 184694 14743717 ~ 14745057 (-) True G494867
TU567561 lncRNA upstream 188947 14747970 ~ 14749440 (-) True G494861
TU567552 lncRNA upstream 195860 14754883 ~ 14756719 (-) True G494854
CI01000340_14547725_14551493.mRNA mRNA downstream 4640 14547570 ~ 14552983 (-) False CI01000340_14547725_14551493
CI01000340_14515689_14516087.mRNA mRNA downstream 41097 14515409 ~ 14516526 (-) False CI01000340_14515689_14516087
CI01000340_14506530_14506877.mRNA mRNA downstream 50746 14506406 ~ 14506877 (-) True CI01000340_14506530_14506877
CI01000340_14467309_14496470.mRNA mRNA downstream 61060 14466969 ~ 14496563 (-) True CI01000340_14467309_14496470
CI01000340_14455602_14462035.mRNA mRNA downstream 93816 14455602 ~ 14463807 (-) True CI01000340_14455602_14462035
CI01000340_14576054_14589873.mRNA mRNA upstream 16813 14575836 ~ 14590203 (-) True CI01000340_14576054_14589873
CI01000340_14823900_14824982.mRNA mRNA upstream 264748 14823771 ~ 14825387 (-) True CI01000340_14823900_14824982
CI01000340_14835497_14846831.mRNA mRNA upstream 276213 14835236 ~ 14846831 (-) True CI01000340_14835497_14846831
CI01000340_14872482_14891188.mRNA mRNA upstream 313057 14872080 ~ 14891618 (-) True CI01000340_14872482_14891188
CI01000340_14894726_14899916.mRNA mRNA upstream 334570 14893593 ~ 14899916 (-) True CI01000340_14894726_14899916
TU567587 other downstream 2455 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 7125 14548727 ~ 14548779 (-) False G494879
TU567402 other downstream 237346 14213348 ~ 14320277 (-) True G494710
TU567403 other downstream 237346 14213348 ~ 14320277 (-) False G494710
TU567401 other downstream 237346 14320240 ~ 14320277 (-) True G494710
TU568273 other upstream 1047718 15606741 ~ 15612563 (-) True G495475
TU568418 other upstream 1612654 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 1955876 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 2484700 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 2618469 17177492 ~ 17242739 (-) True G496853

Expression Profile