RNA id: TU568233


Basic Information

Item Value
RNA id TU568233
length 728
lncRNA type intronic
GC content 0.46
exon number 1
gene id G495450
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15294273 ~ 15295000 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAATAGTTATTAATTTAGTTAATTTATCTATACCAGCACTGGAGTAAACAGTGATGTCATCATCCAGCTCAGTTTAGTTTGCATACAATGGTGTCAATGCAGGCAGATCAAAACACTGTTGAATATCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCAACAGCGGCAAGGAACCCAAACTCCAACAGGTGACATCAGGTGGCAAACAGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTCAGTTAGGGGGCCAGTTCTCCTCTGGACAACAGTGAACAGTGCTTTATTATGATTCAGGCAGCTATCATAAGTCCGATGGGATCACAACAGTCAAAGTATTTATTCCAGTTCCATCCAGTTGAGGATCGTATTCATCACGCCGGTATGGACGGTTTGTTGAGGAACTGTGCCACTGGCTGTCGTGTCGATGAGGCCTTCACAGTGGATGATCTAGTTGACTCAATCTCTGCTGACACTTCAGGGCTGCGTTGTGGTCGTGTCAAGGCGCAGGTCCTCAAACTCACCTGGATACGGCCCGGATCCGGCTGACTACGGTAAACCTCGGGATAAACAGAGAGACTAATATTAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTACATCTGGTGTTATAGGAAGTGTTCCCGGTTCCGGCTGACCTAATTTTATGCAGCCTAAGCGGCCGTTCACACAGAACGCGTTTTTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567618 lncRNA downstream 525059 14769004 ~ 14769214 (-) True G494909
TU567552 lncRNA downstream 537554 14754883 ~ 14756719 (-) True G494854
TU567561 lncRNA downstream 544833 14747970 ~ 14749440 (-) True G494861
TU567573 lncRNA downstream 549216 14743717 ~ 14745057 (-) True G494867
TU567611 lncRNA downstream 577699 14716291 ~ 14716574 (-) True G494902
TU568163 lncRNA upstream 122772 15419793 ~ 15419868 (-) False G495398
TU568165 lncRNA upstream 122772 15419793 ~ 15419989 (-) True G495398
TU568162 lncRNA upstream 122846 15419793 ~ 15419868 (-) True G495398
TU568253 lncRNA upstream 130649 15425649 ~ 15430109 (-) True G495459
TU568191 lncRNA upstream 136216 15431216 ~ 15431529 (-) True G495415
CI01000340_15035570_15229330.mRNA mRNA downstream 64943 15035570 ~ 15229330 (-) True CI01000340_15035570_15229330
CI01000340_14910995_14919035.mRNA mRNA downstream 374916 14910599 ~ 14919357 (-) True CI01000340_14910995_14919035
CI01000340_14894726_14899916.mRNA mRNA downstream 394357 14893593 ~ 14899916 (-) True CI01000340_14894726_14899916
CI01000340_14872482_14891188.mRNA mRNA downstream 402655 14872080 ~ 14891618 (-) True CI01000340_14872482_14891188
CI01000340_14835497_14846831.mRNA mRNA downstream 447442 14835236 ~ 14846831 (-) True CI01000340_14835497_14846831
CI01000340_15312803_15315594.mRNA mRNA upstream 17741 15312741 ~ 15315594 (-) True CI01000340_15312803_15315594
CI01000340_15318569_15329407.mRNA mRNA upstream 23532 15318532 ~ 15330503 (-) True CI01000340_15318569_15329407
CI01000340_15334006_15357378.mRNA mRNA upstream 38088 15333088 ~ 15357378 (-) True CI01000340_15334006_15357378
CI01000340_15418307_15418626.mRNA mRNA upstream 122831 15417831 ~ 15418626 (-) False CI01000340_15418307_15418626
CI01000340_15433393_15440042.mRNA mRNA upstream 138316 15433316 ~ 15440187 (-) True CI01000340_15433393_15440042
TU567578 other downstream 735250 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 739105 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 743775 14548727 ~ 14548779 (-) False G494879
TU567403 other downstream 973996 14213348 ~ 14320277 (-) False G494710
TU568273 other upstream 311741 15606741 ~ 15612563 (-) True G495475
TU568418 other upstream 876677 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 1219899 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1748723 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1882492 17177492 ~ 17242739 (-) True G496853

Expression Profile