RNA id: TU568328


Basic Information

Item Value
RNA id TU568328
length 217
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G495530
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15526530 ~ 15526746 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCGATTCTTTTTGGAGGCTCTTAGAAGTGTAAAAGGAGCGCATTAGTGAAGGGTTTGACATTTGACACGTTTTTGTCACGCCATTATAATGCAATCAGCACCTCTATGCAGCATGATTATTAGGCCAGGTTCACACAGCAACAGAATAGCCTACGTTGTCAGTCCTGCTGTATTTAACACGGTTACGTTCAAGGGGTTAAAAAAGGGGTTTCGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568302 lncRNA downstream 53697 15472524 ~ 15472833 (-) True G495504
TU568300 lncRNA downstream 59201 15467062 ~ 15467329 (-) True G495502
TU568191 lncRNA downstream 95001 15431216 ~ 15431529 (-) True G495415
TU568253 lncRNA downstream 96421 15425649 ~ 15430109 (-) True G495459
TU568165 lncRNA downstream 106541 15419793 ~ 15419989 (-) True G495398
TU568332 lncRNA upstream 6983 15533729 ~ 15533957 (-) True G495534
TU568336 lncRNA upstream 58773 15585519 ~ 15585808 (-) True G495538
TU568337 lncRNA upstream 60407 15587153 ~ 15587443 (-) True G495539
TU568272 lncRNA upstream 79995 15606741 ~ 15610500 (-) False G495475
TU568283 lncRNA upstream 86753 15613499 ~ 15623995 (-) True G495485
CI01000340_15433393_15440042.mRNA mRNA downstream 86343 15433316 ~ 15440187 (-) True CI01000340_15433393_15440042
CI01000340_15418307_15418626.mRNA mRNA downstream 107904 15417831 ~ 15418626 (-) False CI01000340_15418307_15418626
CI01000340_15334006_15357378.mRNA mRNA downstream 169152 15333088 ~ 15357378 (-) True CI01000340_15334006_15357378
CI01000340_15318569_15329407.mRNA mRNA downstream 196027 15318532 ~ 15330503 (-) True CI01000340_15318569_15329407
CI01000340_15312803_15315594.mRNA mRNA downstream 210936 15312741 ~ 15315594 (-) True CI01000340_15312803_15315594
CI01000340_15549307_15555642.mRNA mRNA upstream 21729 15548475 ~ 15557779 (-) True CI01000340_15549307_15555642
CI01000340_15559928_15562340.mRNA mRNA upstream 32856 15559602 ~ 15562340 (-) True CI01000340_15559928_15562340
CI01000340_15614801_15623230.mRNA mRNA upstream 87981 15614727 ~ 15623456 (-) True CI01000340_15614801_15623230
CI01000340_15666594_15673044.mRNA mRNA upstream 139714 15666460 ~ 15673044 (-) True CI01000340_15666594_15673044
CI01000340_15677629_15704765.mRNA mRNA upstream 150844 15677590 ~ 15706680 (-) True CI01000340_15677629_15704765
TU567578 other downstream 967507 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 971362 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 976032 14548727 ~ 14548779 (-) False G494879
TU567403 other downstream 1206253 14213348 ~ 14320277 (-) False G494710
TU568273 other upstream 79995 15606741 ~ 15612563 (-) True G495475
TU568418 other upstream 644931 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 988153 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1516977 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1650746 17177492 ~ 17242739 (-) True G496853

Expression Profile