RNA id: TU568272


Basic Information

Item Value
RNA id TU568272
length 614
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G495475
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15606741 ~ 15612563 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGACATGGGGGTGAGTAAATTATCAGAAAATTTGAATTCTGAAGTGAACTAATCCTTTAAAACACAGTTTTTAAAAACACAAGCATCTGATATTACAAAACAGACATTACAATTCAGAAGTTTTTAATTCAGCTGCAATTCTAACAAATTAAATCAATGTGCAACTTCTAGAACTGTCAATTCAACTGTCAAATGTTTTCTTCCTTGTAAACTCAGATTCACATGTCGCGTCTCTCACCAGCACGTCGTTGCAGATGTCCTGAAGCTCGGCCTCGATCTTCTCACGGTATTCGCGTGCCATCTGCTGTTTCTTCTCATTGCCCTCCGTTTTCTGCTCGATGCTGGAGATCACACGCCAGGACGAGCGGCGGGCGCCAACCACGTTCTTGTAGGCCACAGAGAGCAGGTTGCGCTCTTCGTTGGAAAGCTCAACGCCGCCCTCCGTGACGGCCTTCATGGAAGCAGCCATGTCATCATAGCGCTCAGCCTGCTCAGCGAGTTTAGCCTTCTGCACTAGGTCGCTCTTGTCCATGATGAAACTAATTTAAATATATTTCGAGTCCTGATTTGTGTCTGTTAACGATGGGAGTATCAAGCTGTCCTCCGTTTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568337 lncRNA downstream 19298 15587153 ~ 15587443 (-) True G495539
TU568336 lncRNA downstream 20933 15585519 ~ 15585808 (-) True G495538
TU568332 lncRNA downstream 72784 15533729 ~ 15533957 (-) True G495534
TU568328 lncRNA downstream 79995 15526530 ~ 15526746 (-) True G495530
TU568302 lncRNA downstream 133908 15472524 ~ 15472833 (-) True G495504
TU568283 lncRNA upstream 2999 15613499 ~ 15623995 (-) True G495485
TU568343 lncRNA upstream 24016 15634516 ~ 15634737 (-) True G495545
TU568289 lncRNA upstream 110650 15721150 ~ 15722591 (-) True G495491
TU568381 lncRNA upstream 243188 15853688 ~ 15853903 (-) True G495581
TU568382 lncRNA upstream 245142 15855642 ~ 15857831 (-) True G495582
CI01000340_15559928_15562340.mRNA mRNA downstream 44401 15559602 ~ 15562340 (-) True CI01000340_15559928_15562340
CI01000340_15549307_15555642.mRNA mRNA downstream 48962 15548475 ~ 15557779 (-) True CI01000340_15549307_15555642
CI01000340_15433393_15440042.mRNA mRNA downstream 166554 15433316 ~ 15440187 (-) True CI01000340_15433393_15440042
CI01000340_15418307_15418626.mRNA mRNA downstream 188115 15417831 ~ 15418626 (-) False CI01000340_15418307_15418626
CI01000340_15334006_15357378.mRNA mRNA downstream 249363 15333088 ~ 15357378 (-) True CI01000340_15334006_15357378
CI01000340_15614801_15623230.mRNA mRNA upstream 4227 15614727 ~ 15623456 (-) True CI01000340_15614801_15623230
CI01000340_15666594_15673044.mRNA mRNA upstream 55960 15666460 ~ 15673044 (-) True CI01000340_15666594_15673044
CI01000340_15677629_15704765.mRNA mRNA upstream 67090 15677590 ~ 15706680 (-) True CI01000340_15677629_15704765
CI01000340_15723386_15729584.mRNA mRNA upstream 112610 15723110 ~ 15729978 (-) True CI01000340_15723386_15729584
CI01000340_15741859_15763888.mRNA mRNA upstream 130857 15741357 ~ 15763888 (-) True CI01000340_15741859_15763888
TU567578 other downstream 1047718 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1051573 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1056243 14548727 ~ 14548779 (-) False G494879
TU567403 other downstream 1286464 14213348 ~ 14320277 (-) False G494710
TU568418 other upstream 561177 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 904399 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1433223 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1566992 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 2808818 18442995 ~ 18454680 (-) True G497176

Expression Profile