RNA id: TU568343


Basic Information

Item Value
RNA id TU568343
length 222
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G495545
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15634516 ~ 15634737 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAATATCTCATTCCATTCACGAGTTATAGCCATTTTAGTAAAAGTGGCTCCACCCACTTAGGGACCACGAATTTTTTGATAATTATTGACAATCAGCTGCACTGGTTCCGATCGGGCCAAAAACCTAGGACTAGTTCGCAAAAGTAGTTTTTTTCAAAAAACCTAAAATACCCAAAAAAATTCACAGTGCACCTTGTCCATCTTGATCCAAGGATTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568283 lncRNA downstream 10521 15613499 ~ 15623995 (-) True G495485
TU568272 lncRNA downstream 24016 15606741 ~ 15610500 (-) False G495475
TU568337 lncRNA downstream 47073 15587153 ~ 15587443 (-) True G495539
TU568336 lncRNA downstream 48708 15585519 ~ 15585808 (-) True G495538
TU568332 lncRNA downstream 100559 15533729 ~ 15533957 (-) True G495534
TU568289 lncRNA upstream 86413 15721150 ~ 15722591 (-) True G495491
TU568381 lncRNA upstream 218951 15853688 ~ 15853903 (-) True G495581
TU568382 lncRNA upstream 220905 15855642 ~ 15857831 (-) True G495582
TU568388 lncRNA upstream 224222 15858959 ~ 15859189 (-) True G495587
TU568389 lncRNA upstream 224658 15859395 ~ 15859739 (-) True G495588
CI01000340_15614801_15623230.mRNA mRNA downstream 11060 15614727 ~ 15623456 (-) True CI01000340_15614801_15623230
CI01000340_15559928_15562340.mRNA mRNA downstream 72176 15559602 ~ 15562340 (-) True CI01000340_15559928_15562340
CI01000340_15549307_15555642.mRNA mRNA downstream 76737 15548475 ~ 15557779 (-) True CI01000340_15549307_15555642
CI01000340_15433393_15440042.mRNA mRNA downstream 194329 15433316 ~ 15440187 (-) True CI01000340_15433393_15440042
CI01000340_15418307_15418626.mRNA mRNA downstream 215890 15417831 ~ 15418626 (-) False CI01000340_15418307_15418626
CI01000340_15666594_15673044.mRNA mRNA upstream 31723 15666460 ~ 15673044 (-) True CI01000340_15666594_15673044
CI01000340_15677629_15704765.mRNA mRNA upstream 42853 15677590 ~ 15706680 (-) True CI01000340_15677629_15704765
CI01000340_15723386_15729584.mRNA mRNA upstream 88373 15723110 ~ 15729978 (-) True CI01000340_15723386_15729584
CI01000340_15741859_15763888.mRNA mRNA upstream 106620 15741357 ~ 15763888 (-) True CI01000340_15741859_15763888
CI01000340_15802368_15806754.mRNA mRNA upstream 166156 15800893 ~ 15807394 (-) True CI01000340_15802368_15806754
TU568273 other downstream 21953 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 1075493 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1079348 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1084018 14548727 ~ 14548779 (-) False G494879
TU567401 other downstream 1314239 14320240 ~ 14320277 (-) True G494710
TU568418 other upstream 536940 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 880162 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1408986 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1542755 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 2784581 18442995 ~ 18454680 (-) True G497176

Expression Profile