RNA id: TCONS_00020531


Basic Information

Item Value
RNA id TCONS_00020531
length 3940
RNA type mRNA
GC content 0.49
exon number 12
gene id XLOC_010451
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 8529772 ~ 8663552 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGGCCCAGGCTCCCCCTCCACCAAGGCCGCCCCAGCCTGCCCCCCGCAGGATCTTCCGTAATGCGGTCCCTGACGGAGGAGGATCTTCGGGGGGAGACTGCAAGGAAAACATGCTTCGATCTTATGTGGATCTTCATATTAGTCTTCCCACAGGGTACCAGACCACCATCAATGTGGATGGCAGAAAAGCTCTGATGGATCTGCTGGTGGATCTGTGCAGTCAGTACCATCTGAATCCAGCGTATCACACTCTGGAGCTGTTGTCACCCGATGCTCAGCCCGTCAGCTTTAAGCCCAACGCCCTGCTGGGTGCCCTGGATGTCTCCTGCGCCCTGATCAAAGAACGAGTGCTGGAGGACAGGGTGATTCGGAAACCTCCACCTAAAGTGCCAGAGAAAACCGTGCGATTGGTAGTGAACTATCACCGCAGCCAGAAGGCCGTGGTTCGAGTAAATCCATTAGCGCCCCTGCAGACCCTGGTGCCTGTGATCTGTCAGAAGTGTGAGTTTGATCCAGCCCATGTCCTGCTCTTCAAAGACAATATCAACCACCAACAACTGGACTTGGACAAGTCTCTGAGCGATCTGGGTATCAGGGAGCTCTATGTCCTGGATCAGACATTAGCTGAATCTCTCCGCTCCAATAGTCTGAGTGGATCCGAGAAAAAGGGTCTGCTGGGCTTCCTCAAGTTTAATCGCAGGAAATCAAAGGGTATGTCTGTGGTGGCAAGTGGTCCATGTGTGGAGGCCCGTCCCAGCACTCTGGGTCAATCTCAGTCTGTGATGAACATCTCCAAGATGTCCCCGAAAGTGGAATTAAAGAAACGCAGAGCTCCAGCACCCCCACCAGCTCCCACACAGACTCTACCACCAACATCACAGATAAGCCTTGGCTCTCCGTCCTCACATAATCTACTTAAGAAGCGGAAGGCTCCAGCACCTCCACCTACACCACCACCTAGTACACCCGAGCCAGATATTTCCACCTACGTGCCTACTGCAACTGTGCAGGAACACTACATCCCAGCGTCGGTTGAAAGGACTCCCCGAGCCTCAACTCCAGCTGACGACTCTGATCTGAGCCATAGCATTGAGGATTCAGAGCCAGCCAGGTCCATCTGCAGTAGCTCCAGTGGTGATGATGCAGCAGCTGTAGGATCCAGCAGTAGCAGCCTAGCTGAAGAACCTGTGACGCATCGAGCTGATGTGATAGCTCCATTCACCACTTCTACGCCAGAACCCGAACCCAAACCAGAATATGAACCTGAACTCAAGAAAGAAGCAAGTCCTCGCTCTACACCTGAACTAGAACCGGGTCCACGTCCAGAGGTTCCAGCTGCAGAAGACCTAGAGGTAGAGATGGAGCTGAAAATGGAGGAGACGGAGAATAACCGTCATAGTGGAATAGCTTGGCTACATTCAGCTCACGAGTCTGTGTTAGAAAGGAGAGTACAGCAGGAAGTGGAAACAGTGTCTGTGGCCAGCAGCGAGAGTTTTGCAGACCATGGATATGCCGCATCAGAGGACATGGCAGAGGAGTCCGGCCCGGTCTCTCCCTCTGAAAGAATGCAATCTGTGTCACCCATGGACATCATGTCTCTAAACAGTGACTCAACTCTGCCTGTGAAGCAGTCTAAAGAGTCTTCCAGCGATAGCGATGAGGGATGTGCAACTTGGGGCTCTAGACAGAGTGGACATATTCAGGATGGACAAAAGTCAATTAAGAGACAAAATGGATATGAAGAAGATCCAGAGATTACAGCTCAGATCCACCTCACCCTGGCCGACTTAGATGCAAATCTGGCTGACATGAATCACTCAGATGGAGCGTCTGTATTTGTGGATGATGAAATACCCGTGTCCATTGTTGACATGGACATTCCAGTAACAGCCATTGATGAAGTTCTTGATGATGACCAGTGCAGCGCAAGCGAGTGTGAGTCAGTATTGTTGCGCAGTACTCAAAGCATCTCTAGCCAACCGTGCACACCGTGTGGAGTtatccaaaacaaaaacaacaatgccTGTCTAACAGAGGAGAAACACAGAAGCCCATTCCCAGACATAGAGAAGCAGTTACAAACGGCTACACTCACTGTTATTGACAAACCCACCATCCAGTCTCCGACCAGCAAAAAGCCTTCACAAGATGCTAAGATCACGGATAATATGGAACAGAAGACCACATTCAACTCTGAGGCTAAGAGTAAATCTGAAACCGTTGAACTAACGAGTCAGAAAGACACTGTATTACAGAAGTCCCAAAGTTTTGTGCGTCCTGATGTGCAAAGCGTTCAAAAGGAAAGGACGTCTAGTACCAGAGTCCTGCCAACTCAGGGTAAGATTACCCTAAGCTCTTTCTCTCGCTTTGGAATGAAAACCTTCACAGTCATCCCTCCGAAACCAGCTGTGTCCCAGACCAAGCCCGCAGGCTCTCTAGTCACAGGTGCCATTAAGATTGATGAACAGGGCAACATGGTTACACAGAGACAGATTTCCTCTGGTCCAGAGAAAAATAACACTCCCAGTGTGGATACTACTAGAGCAGACAAAACCCCACTGGTCAAAGCCAAAGCCTTCTGGAGCACTACAGAGAAGCAAGAGAAATCAACTACAGCCAAAACAGAACCCATCGTAAACAATGGAGATACCGATGTGTTCAAGGCCTCGGCTGTGACTGGAAGCTTTAAACTTTCACCTCCCGAGGAAACACACAAAGAGGTCATTATAGTGGAAAGGAAGCCCATATCTGGGGTGGCAAGTAAGCCTTCTTTCTCAGAGAATCATGCAGAAAAGCGTGACCTCTCGTTTCTTATACCTTCCAGAAGAACCTCCAGCCAATATGTAGCTTCTGTCAttgctaaaaacaataaaaacagtagcATTCCTAAAACTAAGATCGATACCACGCCGGCACCGTTGTCTATCAGTGGTGTTCAAAACCCTGTCAATCAACTGTTAAATAATGAGGTTAAACCTACAAGCATTCATAAACCTGCTGTCACAGTCAAACCCACTGAAAATCCAGTGCCTTCTTTTAGACCTAAATGCCTACAAAGTTATGTTGCAGAAAAGCCGACAAGTTCTGAGAGGATAAGCACTCTGCATGGGGGCGACAGAACCAAATCTCTGGATTCACAACCCTTAAGTATCAAAATCCAGCCTTTCCCACATGTGTCTGCTCACATTAAATCCTTCTCTGAAGAAGCCACATCAATCAATAATTTCCCAGACACCTCCTCTGCCCGACAGACGCCAACAGACACCACACACCCACCACTTGCAAAAAAGCCAGAGTTACACAAATCTGAGATTCCATCTGAACCAAACCAGGGCAATGTGTTTGGGCCGGTTAAGAAGTTCAAGCCGGTTATTTTTAAGCCTGTCCAACAGGAAACTTCTATCCATAGCTCGCTGATGGAGGCCATTCAATCTGGAGAGGGCATTGAACGCCTCAGAAAGGTGTCCGACTTGCCTACCAGCTGTACAGTTAAGAAGCCATCGTACAATGATCCAGAGAATGAGCGTTCAGCACTTCTTTCAGCAATAAGAGCTTCAAGCACCTCAGCTAAACTTAAGAAGACCAAATCAGTAGCATCAAAGGAGTTGGAGCAGCTCAGGAAGGTGGAAGAAGACAGAAATGTCCACACAGAAGTCATCTCACCTCGTCCCACATCTCCTGATTTTGTGCCACCTCTACCTCCTTCCTTTAGTCCTCCTCCCCCACCTCCTCCACCTTTAGCTCCAGCCAAACCTCCTGTAGTGCTGCCTCCAGGAGGAAACCCAGAGGCGGCCAGGGAGGCTCTTCTGGAGGCCATTCGCTCAGGCTCTGGGGCTCAACGGCTAAGGAAGGTCCCTGTCACACAGACAAGAAGGCAAGTGAACGGGAGACTTGGCACCATTCAAGCAACATCACCCCTCTCTTACGGGCACTAAA

Function

GO:

id name namespace
GO:0060088 auditory receptor cell stereocilium organization biological_process
GO:0003146 heart jogging biological_process
GO:0060271 cilium assembly biological_process
GO:0001947 heart looping biological_process
GO:0001726 ruffle cellular_component
GO:0042995 cell projection cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-091020-11 Predicted to enable actin monomer binding activity. Acts upstream of or within cilium assembly and embryonic organ morphogenesis. Predicted to be located in several cellular components, including cytoskeleton; cytosol; and ruffle. Is expressed in several structures, including Kupffer's vesicle; midbrain hindbrain boundary neural rod; nervous system; pronephros; and trunk. Orthologous to human COBL (cordon-bleu WH2 repeat protein).

Ensembl:

ensembl_id ENSDART00000189189

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020523 lncRNA downstream 229179 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00021785 lncRNA downstream 390046 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020515 lncRNA downstream 547457 7968221 ~ 7984901 (-) True XLOC_010442
TCONS_00021784 lncRNA downstream 548575 7968024 ~ 7983783 (-) False XLOC_010442
TCONS_00020514 lncRNA downstream 558421 7968020 ~ 7973937 (-) False XLOC_010442
TCONS_00022116 lncRNA upstream 55482 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020539 lncRNA upstream 827522 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00020541 lncRNA upstream 951004 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00022117 lncRNA upstream 1145677 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00022118 lncRNA upstream 1399486 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00020524 mRNA downstream 11884 8364085 ~ 8520474 (-) False XLOC_010449
TCONS_00020522 mRNA downstream 189609 8298542 ~ 8342749 (-) False XLOC_010448
TCONS_00020520 mRNA downstream 251473 8258203 ~ 8280885 (-) True XLOC_010446
TCONS_00020519 mRNA downstream 280373 8188188 ~ 8251985 (-) True XLOC_010445
TCONS_00020518 mRNA downstream 314863 8188188 ~ 8217495 (-) False XLOC_010445
TCONS_00020532 mRNA upstream 138316 8751815 ~ 8927425 (-) True XLOC_010453
TCONS_00020534 mRNA upstream 662190 9275689 ~ 9383629 (-) False XLOC_010454
TCONS_00020533 mRNA upstream 662190 9275689 ~ 9383629 (-) True XLOC_010454
TCONS_00020536 mRNA upstream 807503 9421002 ~ 9425451 (-) False XLOC_010456
TCONS_00020537 mRNA upstream 808912 9422411 ~ 9423735 (-) True XLOC_010456
TCONS_00020526 other downstream 53349 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 136799 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 243911 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 836142 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020506 other downstream 836147 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020535 other upstream 688580 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020559 other upstream 1641708 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 2216310 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 2302791 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 3147420 11760919 ~ 11779472 (-) False XLOC_010484

Expression Profile

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