RNA id: TU568289


Basic Information

Item Value
RNA id TU568289
length 1442
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G495491
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15721150 ~ 15722591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGGGCTTAAAGAAGTTTCCCGACTGATGATTACAACAGTTGTGGTGCTCATGTTGTAAATATGATCATTCTTACATGAATTGAAGGCAGCGTTAGTACTTTGTACCAGTACATAGTACTTTTAGAATTTGTTCTGTATATAAAACCTAGTGTATATATGAACCGTTGCTTCATAGGGCATTTTTGTACTCTTAATGTTTTCTATCCGCCACTTTAGCTGGCAAAGCAGATGGTGTTGATTTAAAAGTAGCCACACTGTCTGACACTAAGTATTACCCTTGGATAGCATCATTCAGGAGGTTACACGTGTAGTCTTCCAAACGTTCTCATGTGTTTATACTAAAATGTGATTCTTGTCACTTAAGACATGCATTTAGAGACTCTAAAATGCACTTTGGGTAATGTTGCAATTAGCTGCTTAACTACTATAAAGTACTGTATTACTTCAATGAAGCCTATAGTATAGACTCACTGCATCTCAGTGTGTCTCTGATGCAATAGAAGTTAATTGCAAGGAAAACATGATTTACATTATTATTTTATTAAAACAGGTAAGCTTTTCCATCTTTTGATATTTACTAATGTTAATGGAGCTAATTTCTGTGTAGAAGTGTTTGCGACAGCTTACACTGAATGCTTGATAGCGTTTGATCATTGTCACTTAATATGCATCTTTGACAAATCTATAGATACATTTTTAATCTACAAGCTTTTTTATCCAACAAGTAGGAGATACTGTGAATAGGTGAGCTTGAAAAGATGATGTTAAAGTTTCCTTGTAGACCTGATTCAGAATCAGCTCCGGTCACCAGACACCTTCATATAGAGAAGACGTGGCTGAGAAACCCGAGATCTAGAGTAAAGGTACAAAAGCTTGTAAAGTAGTGCCGATCCAAGGTCAGGTTTTACCTTTCATATCCACAACACGTAAACATAAATATGTGATTGATAGGGGCAGATCCCATTTTAATGTGTTTAAACATGATTACATATTACTGGTAAAGTGCTAACTTTTGCCACTCAAGCCAATACCTGCCGATCCACCTGCCGAGCACTAACTTGAAATGTAAGGCCTTGAACTTACTAGTGCATTCCTAGTAATGTAGTCAGTGCCTACAATAGTTTTTCATTATTTTTTGCTCACCTTTTTGTCTTGGTAGTGCCTTCCAGTGACTTGCTTTTTTTGTTTGCCTTTTTTATGTGTTGTTTGCATTTTATGTACATATGAAAATCAAATATTATAAAATGTGATCTATTAACATAACCGTGTTTGGGAGTTTTAGATGTGTAACATACTTTTACAACTGCAGATTTTTACATGTAATCTGTTACATGTGACTTGCATAACTTTTCCAACAGTGTTACCAAAGACTACCATAAATCAATAAAGTTTATGTTTCTCTTTTTTTCAAAGCAGATTTTGTAAGCGTAGTAACAAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568343 lncRNA downstream 86413 15634516 ~ 15634737 (-) True G495545
TU568283 lncRNA downstream 97155 15613499 ~ 15623995 (-) True G495485
TU568272 lncRNA downstream 110650 15606741 ~ 15610500 (-) False G495475
TU568337 lncRNA downstream 133707 15587153 ~ 15587443 (-) True G495539
TU568336 lncRNA downstream 135342 15585519 ~ 15585808 (-) True G495538
TU568381 lncRNA upstream 131097 15853688 ~ 15853903 (-) True G495581
TU568382 lncRNA upstream 133051 15855642 ~ 15857831 (-) True G495582
TU568388 lncRNA upstream 136368 15858959 ~ 15859189 (-) True G495587
TU568389 lncRNA upstream 136804 15859395 ~ 15859739 (-) True G495588
TU568398 lncRNA upstream 157714 15880305 ~ 15880509 (-) True G495597
CI01000340_15677629_15704765.mRNA mRNA downstream 14470 15677590 ~ 15706680 (-) True CI01000340_15677629_15704765
CI01000340_15666594_15673044.mRNA mRNA downstream 48106 15666460 ~ 15673044 (-) True CI01000340_15666594_15673044
CI01000340_15614801_15623230.mRNA mRNA downstream 97694 15614727 ~ 15623456 (-) True CI01000340_15614801_15623230
CI01000340_15559928_15562340.mRNA mRNA downstream 158810 15559602 ~ 15562340 (-) True CI01000340_15559928_15562340
CI01000340_15549307_15555642.mRNA mRNA downstream 163371 15548475 ~ 15557779 (-) True CI01000340_15549307_15555642
CI01000340_15723386_15729584.mRNA mRNA upstream 519 15723110 ~ 15729978 (-) True CI01000340_15723386_15729584
CI01000340_15741859_15763888.mRNA mRNA upstream 18766 15741357 ~ 15763888 (-) True CI01000340_15741859_15763888
CI01000340_15802368_15806754.mRNA mRNA upstream 78302 15800893 ~ 15807394 (-) True CI01000340_15802368_15806754
CI01000340_15818649_15820582.mRNA mRNA upstream 95289 15817880 ~ 15820582 (-) True CI01000340_15818649_15820582
CI01000340_15843587_15847043.mRNA mRNA upstream 120570 15843161 ~ 15847095 (-) True CI01000340_15843587_15847043
TU568273 other downstream 108587 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 1162127 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1165982 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1170652 14548727 ~ 14548779 (-) False G494879
TU567401 other downstream 1400873 14320240 ~ 14320277 (-) True G494710
TU568418 other upstream 449086 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 792308 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1321132 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1454901 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 2696727 18442995 ~ 18454680 (-) True G497176

Expression Profile