RNA id: TU568386


Basic Information

Item Value
RNA id TU568386
length 530
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G495585
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15882952 ~ 15883481 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAACTGAAGCCCAAACTGGTGAATAAGGTCAAAGCTCTCCACGAGGAATACGTGATCCTCAAACGGTGGTGATGCCATTGCTCGCAGTGAAGTCATATCGGCCCTGGCGACACCAATGGCGTAGATCTCAATCCCAGACTCTCTCGCAGCAGCCGCCACTTCGGCCACGCGGTCTTGAGGGCGACCGTCTGTCACGATAACAGCGACATGGGGAACATTGGGACGGGCGCCTTCCTCGGCAGAGAAGGCTACATTCATGGCGTAACGGATTGCCAGGCCGGTCATAGTGCCCTGTGCCAATGGAATGATCTCGTTGATAGCTTTGACCATCTGCGCTGGCTTACTGAAGGCTTTGAGGGAGAAGACGTTCTGGACCTGGCTGGAGTATTGGACCACACCAACTCTTGTAGATTCCAGGCCAATGTCTAGCTCATGGATGATGTCAATCATGAACTTGCGCATAGTCTCAAACTCATGGGGGCGAACGCTTCGGGAGCCGTCGATGATGAACACAAGGTCAACCGGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568398 lncRNA downstream 2443 15880305 ~ 15880509 (-) True G495597
TU568389 lncRNA downstream 23213 15859395 ~ 15859739 (-) True G495588
TU568388 lncRNA downstream 23763 15858959 ~ 15859189 (-) True G495587
TU568382 lncRNA downstream 25121 15855642 ~ 15857831 (-) True G495582
TU568381 lncRNA downstream 29049 15853688 ~ 15853903 (-) True G495581
TU568387 lncRNA upstream 12000 15895481 ~ 15895819 (-) True G495586
TU568401 lncRNA upstream 15362 15898843 ~ 15899074 (-) True G495600
TU568385 lncRNA upstream 17589 15901070 ~ 15901879 (-) True G495584
TU568404 lncRNA upstream 35386 15918867 ~ 15919291 (-) True G495603
TU568422 lncRNA upstream 41929 15925410 ~ 15929378 (-) True G495615
CI01000340_15863675_15876969.mRNA mRNA downstream 5983 15863670 ~ 15876969 (-) True CI01000340_15863675_15876969
CI01000340_15843587_15847043.mRNA mRNA downstream 35857 15843161 ~ 15847095 (-) True CI01000340_15843587_15847043
CI01000340_15818649_15820582.mRNA mRNA downstream 62370 15817880 ~ 15820582 (-) True CI01000340_15818649_15820582
CI01000340_15802368_15806754.mRNA mRNA downstream 75558 15800893 ~ 15807394 (-) True CI01000340_15802368_15806754
CI01000340_15741859_15763888.mRNA mRNA downstream 119064 15741357 ~ 15763888 (-) True CI01000340_15741859_15763888
CI01000340_16001904_16003536.mRNA mRNA upstream 118353 16001834 ~ 16003536 (-) True CI01000340_16001904_16003536
CI01000340_16006372_16024582.mRNA mRNA upstream 122859 16006340 ~ 16024704 (-) False CI01000340_16006372_16024582
CI01000340_16053984_16057786.mRNA mRNA upstream 170429 16053910 ~ 16058901 (-) True CI01000340_16053984_16057786
CI01000340_16061769_16080354.mRNA mRNA upstream 178026 16061507 ~ 16080354 (-) True CI01000340_16061769_16080354
CI01000340_16101493_16104784.mRNA mRNA upstream 216433 16099914 ~ 16104935 (-) True CI01000340_16101493_16104784
TU568273 other downstream 270389 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 1323929 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1327784 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1332454 14548727 ~ 14548779 (-) False G494879
TU567401 other downstream 1562675 14320240 ~ 14320277 (-) True G494710
TU568418 other upstream 288196 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 631418 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1160242 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1294011 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 2535837 18442995 ~ 18454680 (-) True G497176

Expression Profile