RNA id: TU568387



Basic Information


Item Value
RNA id TU568387
length 339
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G495586
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15895481 ~ 15895819 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCTTGGCCTTCTTAGCCCACTCTTGAATATCATCCTGTGAACGCCCATCCGTAAAGACCAGGCCGACCCGTGGGATGTTCTTCTCAGCAGGACGGGCTCCATCAGCCTCGGTGAAGCTGTTCTCCACCATGTGCTTGAGAGCCAAGCCTGTCATGGTTCCCTTCTCCATGTATGCCACATTCATCACAGCCTTTTTGATCTCTTCTTTTGTCTGATACATGCTGAGCGGGAACTCTGTCCGCACTCGGCTTGAATACTGGACGAGACCCACGCGTGTTCCTTTAGGGGAGACGTCCAACTGATCCACCACCTGGTTGACAAACTGCTTGACAAGCTCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU568386 lncRNA downstream 12000 15882952 ~ 15883481 (-) True G495585
TU568398 lncRNA downstream 14972 15880305 ~ 15880509 (-) True G495597
TU568389 lncRNA downstream 35742 15859395 ~ 15859739 (-) True G495588
TU568388 lncRNA downstream 36292 15858959 ~ 15859189 (-) True G495587
TU568382 lncRNA downstream 37650 15855642 ~ 15857831 (-) True G495582
TU568401 lncRNA upstream 3024 15898843 ~ 15899074 (-) True G495600
TU568385 lncRNA upstream 5251 15901070 ~ 15901879 (-) True G495584
TU568404 lncRNA upstream 23048 15918867 ~ 15919291 (-) True G495603
TU568422 lncRNA upstream 29591 15925410 ~ 15929378 (-) True G495615
TU568427 lncRNA upstream 65359 15961178 ~ 16028981 (-) True G495620
CI01000340_15863675_15876969.mRNA mRNA downstream 18512 15863670 ~ 15876969 (-) True CI01000340_15863675_15876969
CI01000340_15843587_15847043.mRNA mRNA downstream 48386 15843161 ~ 15847095 (-) True CI01000340_15843587_15847043
CI01000340_15818649_15820582.mRNA mRNA downstream 74899 15817880 ~ 15820582 (-) True CI01000340_15818649_15820582
CI01000340_15802368_15806754.mRNA mRNA downstream 88087 15800893 ~ 15807394 (-) True CI01000340_15802368_15806754
CI01000340_15741859_15763888.mRNA mRNA downstream 131593 15741357 ~ 15763888 (-) True CI01000340_15741859_15763888
CI01000340_16001904_16003536.mRNA mRNA upstream 106015 16001834 ~ 16003536 (-) True CI01000340_16001904_16003536
CI01000340_16006372_16024582.mRNA mRNA upstream 110521 16006340 ~ 16024704 (-) False CI01000340_16006372_16024582
CI01000340_16053984_16057786.mRNA mRNA upstream 158091 16053910 ~ 16058901 (-) True CI01000340_16053984_16057786
CI01000340_16061769_16080354.mRNA mRNA upstream 165688 16061507 ~ 16080354 (-) True CI01000340_16061769_16080354
CI01000340_16101493_16104784.mRNA mRNA upstream 204095 16099914 ~ 16104935 (-) True CI01000340_16101493_16104784
TU568273 other downstream 282918 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 1336458 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1340313 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1344983 14548727 ~ 14548779 (-) False G494879
TU567401 other downstream 1575204 14320240 ~ 14320277 (-) True G494710
TU568418 other upstream 275858 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 619080 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1147904 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1281673 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 2523499 18442995 ~ 18454680 (-) True G497176

Expression Profile