RNA id: TU568435


Basic Information

Item Value
RNA id TU568435
length 918
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id G495622
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15969969 ~ 15979230 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCAAATCAGGCAAACAAGTCTGGAACTCTATGGTCTAGTTAGCAGAATGAAAAGGTCTTTCCTCTGGGTGTTCTGTATATGTACCGAAATTGAGGACACATATTCCCAGAGGGGAATGTTGATCACTTTAGACCTTGTCTCACAAACAAAAACACAGCAGAGTTTTTTGACAAAGACAATAGTCATTCACCTTGTGGCGGTCGGCTGTTGGTATAACATAGTTCTCTGCCCTCAGGTTGGATGTTGCAACTATATAGTCCATGTGGAAATTACTGTCATCATCCTTCTCAAACTCTTGTGGATGCATCCGGAAGTTTTGGTCCTTCAGCTGGAGTTTGGACAGCTTCTCCTTTAACATCTCCAGCTTGACTTTGTCTTCCTCTTTTCTCTCCTCATTTTCCTCTTTCAGCTGCTGGTCGGTCACTGCTATCTTTACACTAGATTTAGGGGTGAACTCGGGCACTTTTACTTCCTGCAGAATGCTCTGAATGTCAGCACGATTTCTTGAGCCTGTAATCCCATAGATCTGGCCATATAAATTGGCCGCTGCCACAATGAAGTCCATATGGGTGGTATTGTTGGTGTCAAAGGTCAAAGGATGTGGACGTCTCTTTGCGCCCATCCAGAACGGAAGTCCAGAGCTTGTTACCTAGTGAGGGCTGGTCAGGGGGAAAGCAGTGCAGTAGTTGTCTAATTTGATTGTTGTAAAGTGTTTCCCACTGTTTGCGGGCCCAGCTGACACAGTCAGTCCAGTTCTGAGGCCATTCCTCGCTCAGACTCCTATAGACACCCTCCAACATTTCCACAGCCTCCACATCCCCACGGGCGACTTTCCGATCTACATAGGTTGGGTCACTGCAGACAGAGATGGAGAAAAGGGGTAGAGCTGTCTGTATGCTATGCTATGCAGTATGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568422 lncRNA downstream 42908 15925410 ~ 15929378 (-) True G495615
TU568404 lncRNA downstream 52995 15918867 ~ 15919291 (-) True G495603
TU568385 lncRNA downstream 70407 15901070 ~ 15901879 (-) True G495584
TU568401 lncRNA downstream 73212 15898843 ~ 15899074 (-) True G495600
TU568387 lncRNA downstream 76467 15895481 ~ 15895819 (-) True G495586
TU568443 lncRNA upstream 35094 16014324 ~ 16016135 (-) True G495630
TU568456 lncRNA upstream 116960 16096190 ~ 16097201 (-) True G495642
TU568486 lncRNA upstream 306696 16285926 ~ 16286334 (-) True G495668
TU568501 lncRNA upstream 331976 16311206 ~ 16315130 (-) True G495682
TU569620 lncRNA upstream 480411 16459641 ~ 16459909 (-) True G496641
CI01000340_15863675_15876969.mRNA mRNA downstream 95317 15863670 ~ 15876969 (-) True CI01000340_15863675_15876969
CI01000340_15843587_15847043.mRNA mRNA downstream 125191 15843161 ~ 15847095 (-) True CI01000340_15843587_15847043
CI01000340_15818649_15820582.mRNA mRNA downstream 151704 15817880 ~ 15820582 (-) True CI01000340_15818649_15820582
CI01000340_15802368_15806754.mRNA mRNA downstream 164892 15800893 ~ 15807394 (-) True CI01000340_15802368_15806754
CI01000340_15741859_15763888.mRNA mRNA downstream 208398 15741357 ~ 15763888 (-) True CI01000340_15741859_15763888
CI01000340_16001904_16003536.mRNA mRNA upstream 22604 16001834 ~ 16003536 (-) True CI01000340_16001904_16003536
CI01000340_16006372_16024582.mRNA mRNA upstream 27110 16006340 ~ 16024704 (-) False CI01000340_16006372_16024582
CI01000340_16053984_16057786.mRNA mRNA upstream 74680 16053910 ~ 16058901 (-) True CI01000340_16053984_16057786
CI01000340_16061769_16080354.mRNA mRNA upstream 82277 16061507 ~ 16080354 (-) True CI01000340_16061769_16080354
CI01000340_16101493_16104784.mRNA mRNA upstream 120684 16099914 ~ 16104935 (-) True CI01000340_16101493_16104784
TU568273 other downstream 359723 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 1413263 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1417118 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1421788 14548727 ~ 14548779 (-) False G494879
TU567401 other downstream 1652009 14320240 ~ 14320277 (-) True G494710
TU568418 other upstream 192447 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 535669 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1064493 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1198262 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 2440088 18442995 ~ 18454680 (-) True G497176

Expression Profile