RNA id: TU569620


Basic Information

Item Value
RNA id TU569620
length 269
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G496641
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16459641 ~ 16459909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAATGGTTCTAAAAATATGGCTTCTTATAGAAAAAGTGTTCCTCTGGCTCAATTTACCCCAGGTTAGGGGTAAGTTGAGCCGAGTCAGTAGGTGGGTGTAAACTGACCATCTAACTGAATCTGAATCAAACCCATGTGAAATTTTAAAGATAATGTACCTATTTTAAAAACTAATTTAATAATCAAATTTCCTTTTACAAATATTCTTTGTAAAAATATTTTACAAATATTTATTTTCTTTAAAGCTAAATTAAACAACATAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568501 lncRNA downstream 144511 16311206 ~ 16315130 (-) True G495682
TU568486 lncRNA downstream 173307 16285926 ~ 16286334 (-) True G495668
TU568456 lncRNA downstream 362440 16096190 ~ 16097201 (-) True G495642
TU568443 lncRNA downstream 443506 16014324 ~ 16016135 (-) True G495630
TU568435 lncRNA downstream 480411 15972286 ~ 15979230 (-) False G495622
TU569633 lncRNA upstream 65637 16525546 ~ 16527155 (-) True G496651
TU569642 lncRNA upstream 119033 16578942 ~ 16579856 (-) True G496658
TU569643 lncRNA upstream 120204 16580113 ~ 16580492 (-) True G496659
TU569672 lncRNA upstream 182715 16642624 ~ 16643141 (-) True G496685
TU569692 lncRNA upstream 235230 16695139 ~ 16695401 (-) True G496698
CI01000340_16408042_16409453.mRNA mRNA downstream 46705 16407985 ~ 16412936 (-) True CI01000340_16408042_16409453
CI01000340_16353966_16364847.mRNA mRNA downstream 94745 16353816 ~ 16364896 (-) True CI01000340_16353966_16364847
CI01000340_16278246_16280290.mRNA mRNA downstream 178824 16278027 ~ 16280817 (-) True CI01000340_16278246_16280290
CI01000340_16206491_16266692.mRNA mRNA downstream 192949 16206252 ~ 16266692 (-) True CI01000340_16206491_16266692
CI01000340_16184729_16192901.mRNA mRNA downstream 266740 16184043 ~ 16192901 (-) True CI01000340_16184729_16192901
CI01000340_16492560_16496822.mRNA mRNA upstream 32232 16492141 ~ 16497962 (-) True CI01000340_16492560_16496822
CI01000340_16502291_16507977.mRNA mRNA upstream 42018 16501927 ~ 16509948 (-) True CI01000340_16502291_16507977
CI01000340_16515291_16518346.mRNA mRNA upstream 55156 16515065 ~ 16518531 (-) False CI01000340_16515291_16518346
CI01000340_16540718_16544143.mRNA mRNA upstream 80809 16540718 ~ 16544143 (-) True CI01000340_16540718_16544143
CI01000340_16584213_16590736.mRNA mRNA upstream 124072 16583981 ~ 16592930 (-) True CI01000340_16584213_16590736
TU568418 other downstream 279556 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 847078 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 1900618 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1904473 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1909143 14548727 ~ 14548779 (-) False G494879
TU569607 other upstream 54990 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 583814 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 717583 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 1959409 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 2698960 19158869 ~ 19164472 (-) False G497442

Expression Profile