RNA id: TU569879


Basic Information

Item Value
RNA id TU569879
length 391
lncRNA type intronic
GC content 0.31
exon number 2
gene id G496854
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17198333 ~ 17199818 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTTTATAACTCACAATCCTGACTTTATAACTCGCAATTCTGACTTTATATCACACAATCCTGACTTAATGTCTCGCAATTCTGACTTTATATTTCACAATTTTGTTTATAACTCGCAATTCTGACTAAATATAAACTTTATAACTCGCAATTCTGACTTTATCTTGCAATTCTGACTTTATATCACACAATCCTGAATTAATGTCTCGCAATTCTGACTTTATATCACACAATCCTGAATTAATGTCTCGCAATTCTGACTTTATATTTCACAATTTTGTTTATAACTCGCAATTCTGACTTTATATCGCACAATCCTGACTTTATAACTCGCAATTCTGACTTTATATCGCACAATCCTGACTTTATAACTCGCAATTCTGACTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU569857 lncRNA downstream 158687 17033136 ~ 17039646 (-) True G496833
TU569853 lncRNA downstream 205014 16993086 ~ 16993319 (-) True G496829
TU569815 lncRNA downstream 224543 16968356 ~ 16973790 (-) True G496801
TU569888 lncRNA upstream 58866 17258684 ~ 17259144 (-) True G496863
TU569960 lncRNA upstream 270376 17470194 ~ 17470651 (-) True G496925
TU569969 lncRNA upstream 271739 17471557 ~ 17471761 (-) True G496930
TU569971 lncRNA upstream 289819 17489637 ~ 17489846 (-) True G496932
TU569991 lncRNA upstream 325064 17524882 ~ 17596164 (-) True G496950
CI01000340_17146962_17186247.mRNA mRNA downstream 11841 17146445 ~ 17186492 (-) True CI01000340_17146962_17186247
CI01000340_17122774_17130168.mRNA mRNA downstream 68165 17122396 ~ 17130168 (-) True CI01000340_17122774_17130168
CI01000340_17094196_17104831.mRNA mRNA downstream 91546 17093716 ~ 17106787 (-) True CI01000340_17094196_17104831
CI01000340_17078619_17088012.mRNA mRNA downstream 110321 17078619 ~ 17088012 (-) True CI01000340_17078619_17088012
CI01000340_17053954_17065047.mRNA mRNA downstream 133286 17052377 ~ 17065047 (-) True CI01000340_17053954_17065047
CI01000340_17245510_17257329.mRNA mRNA upstream 44542 17244360 ~ 17257631 (-) True CI01000340_17245510_17257329
CI01000340_17318768_17326504.mRNA mRNA upstream 118282 17318100 ~ 17326544 (-) True CI01000340_17318768_17326504
CI01000340_17354694_17378496.mRNA mRNA upstream 154436 17354254 ~ 17378496 (-) True CI01000340_17354694_17378496
CI01000340_17451836_17453987.mRNA mRNA upstream 251634 17451452 ~ 17455983 (-) True CI01000340_17451836_17453987
CI01000340_17668871_17688583.mRNA mRNA upstream 468637 17668455 ~ 17689161 (-) True CI01000340_17668871_17688583
TU569869 other downstream 152645 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 678359 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 1018248 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 1585770 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 2639310 14557623 ~ 14559023 (-) True G494872
TU570236 other upstream 1219500 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 1959051 19158869 ~ 19164472 (-) False G497442

Expression Profile