RNA id: TCONS_00020540


Basic Information

Item Value
RNA id TCONS_00020540
length 460
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_010457
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9433738 ~ 9453591 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttgttttgtttgttttcttcctAGATTTTTCTCCAGGATGTCACTGCCTAAACGTGAGGTTGATGAACTGAGGCCATGGGTGGAACGCACAGTAAAGAAGGTCCTTGGCTTCTCTGAACCCACTGTGGTCACAGCAGCATTGCATTGTGTGGGAAAAGGCTTAGACAAAAGAAAAACCATAGatcagctAAGACCATTTCTTGATGATTCGGCAAGCAGTTTCGTTGAGCGTCTGTTTGAAGCTCTCGAGGAAAGCAGAAACTCTCGTGGAAGTAAAGGAAGTGGAGAGAAAAACCGCAAAAGAGAACTAAAAGAAGTGTTTGGAGATGAGATGGAAGGGGTGAAGGATGTAGTCAGTGTGGAATCAGCAGTAAAAAAGAAAAGGGTGCCCCGCTTTGAGGAGGTGGAAGAACCAGTTGTTTTACCTGGTCCCCCGACTGAGAGTCCTGGCATGCTCA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040823-3 Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 18. Orthologous to human PRPF3 (pre-mRNA processing factor 3).

Ensembl:

ensembl_id ENSDART00000136522

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020539 lncRNA downstream 4917 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 767458 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00022115 lncRNA downstream 881819 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00020523 lncRNA downstream 1143741 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00021785 lncRNA downstream 1304608 8140712 ~ 8142312 (-) True XLOC_010444
TCONS_00020541 lncRNA upstream 114791 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00022117 lncRNA upstream 309464 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00022118 lncRNA upstream 563273 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00020554 lncRNA upstream 615214 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00020557 lncRNA upstream 755398 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00020536 mRNA downstream 21469 9421002 ~ 9425451 (-) False XLOC_010456
TCONS_00020537 mRNA downstream 23185 9422411 ~ 9423735 (-) True XLOC_010456
TCONS_00020534 mRNA downstream 63291 9275689 ~ 9383629 (-) False XLOC_010454
TCONS_00020533 mRNA downstream 63291 9275689 ~ 9383629 (-) True XLOC_010454
TCONS_00020532 mRNA downstream 519495 8751815 ~ 8927425 (-) True XLOC_010453
TCONS_00020542 mRNA upstream 222414 9672126 ~ 9675982 (-) True XLOC_010459
TCONS_00020543 mRNA upstream 231196 9680908 ~ 9694822 (-) True XLOC_010460
TCONS_00020544 mRNA upstream 337671 9787383 ~ 9802998 (-) False XLOC_010462
TCONS_00020545 mRNA upstream 344156 9793868 ~ 9802449 (-) True XLOC_010462
TCONS_00020546 mRNA upstream 357551 9807263 ~ 9830451 (-) True XLOC_010463
TCONS_00020535 other downstream 144726 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 967911 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1051361 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1158473 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 1750704 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 805495 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 1380097 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 1466578 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 2311207 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 2562362 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

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