RNA id: TU570068


Basic Information

Item Value
RNA id TU570068
length 326
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G497021
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17778714 ~ 17820423 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCATTCAGTAAGTGCTATACCATGTTATTGTTAACATGTTAACAAATTAGCAAGTTAGCAATTTCTGAATTTTCTTATTAGGATTTACAGTGCAGTAAATAACTTATTTGATTTGCAAGAACTCGAAACAAAAAAGTTAATTAACTAAATATGTTATGTTAATTGCTGTCAAAATGTATGAGTTAGCTAACTCAGTACTTCCAGTTAGGAGCAATTAACATGCATGAGTACTGCAAACTCAGAATTTGATAGTTCTGCTTACTTAAAATTGTGAAAATCATAACTCAAAAAACGGATGTAACTGATTACCTCAATTTTTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU569991 lncRNA downstream 182550 17524882 ~ 17596164 (-) True G496950
TU569971 lncRNA downstream 288868 17489637 ~ 17489846 (-) True G496932
TU569969 lncRNA downstream 306953 17471557 ~ 17471761 (-) True G496930
TU569960 lncRNA downstream 308063 17470194 ~ 17470651 (-) True G496925
TU569888 lncRNA downstream 519570 17258684 ~ 17259144 (-) True G496863
TU570085 lncRNA upstream 49442 17869865 ~ 17870084 (-) True G497037
TU570102 lncRNA upstream 72480 17892903 ~ 17893315 (-) True G497053
TU570103 lncRNA upstream 79952 17900375 ~ 17900599 (-) True G497054
TU570131 lncRNA upstream 143269 17963692 ~ 17964078 (-) True G497081
TU570142 lncRNA upstream 186232 18006655 ~ 18007015 (-) True G497092
CI01000340_17700896_17753828.mRNA mRNA downstream 24886 17700825 ~ 17753828 (-) True CI01000340_17700896_17753828
CI01000340_17668871_17688583.mRNA mRNA downstream 89553 17668455 ~ 17689161 (-) True CI01000340_17668871_17688583
CI01000340_17451836_17453987.mRNA mRNA downstream 322731 17451452 ~ 17455983 (-) True CI01000340_17451836_17453987
CI01000340_17354694_17378496.mRNA mRNA downstream 400218 17354254 ~ 17378496 (-) True CI01000340_17354694_17378496
CI01000340_17318768_17326504.mRNA mRNA downstream 452170 17318100 ~ 17326544 (-) True CI01000340_17318768_17326504
CI01000340_17996222_18008569.mRNA mRNA upstream 175011 17995434 ~ 18010838 (-) True CI01000340_17996222_18008569
CI01000340_18013773_18027276.mRNA mRNA upstream 193108 18013531 ~ 18027276 (-) True CI01000340_18013773_18027276
CI01000340_18030360_18041157.mRNA mRNA upstream 209822 18030245 ~ 18041157 (-) True CI01000340_18030360_18041157
CI01000340_18091595_18104080.mRNA mRNA upstream 270385 18090808 ~ 18104080 (-) True CI01000340_18091595_18104080
CI01000340_18185156_18206837.mRNA mRNA upstream 364487 18184910 ~ 18206837 (-) True CI01000340_18185156_18206837
TU569877 other downstream 535975 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 733026 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 1258740 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 1598629 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 2166151 15606741 ~ 15612563 (-) True G495475
TU570236 other upstream 598895 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 1338446 19158869 ~ 19164472 (-) False G497442

Expression Profile