RNA id: TU570102


Basic Information

Item Value
RNA id TU570102
length 413
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G497053
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17892903 ~ 17893315 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAACTCATTGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGCGTTGAATTGACCCTCGTTTGTGAAGCAGTCCAGCGTAAAATGACGGCATGTCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCACCCCCTTTGTTTTGTGTTCTCAGGGGCGGGTTTATGTAAATTTTGGGGTTTGTGATGTCACTAACCTGGGAAGAAGCTCGTTGTAGTCCCTACCAGCCTTTTGTTGTAGTCCTTAAACAGTGATTTCTGTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGTGTCGTAACTTTGCAGATGTTGTTTATGCTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTTAAATCATAATCAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570085 lncRNA downstream 22819 17869865 ~ 17870084 (-) True G497037
TU570073 lncRNA downstream 58386 17810886 ~ 17834517 (-) True G497025
TU570068 lncRNA downstream 72480 17778714 ~ 17820423 (-) True G497021
TU569991 lncRNA downstream 296739 17524882 ~ 17596164 (-) True G496950
TU569971 lncRNA downstream 403057 17489637 ~ 17489846 (-) True G496932
TU570103 lncRNA upstream 7060 17900375 ~ 17900599 (-) True G497054
TU570131 lncRNA upstream 70377 17963692 ~ 17964078 (-) True G497081
TU570142 lncRNA upstream 113340 18006655 ~ 18007015 (-) True G497092
TU570144 lncRNA upstream 150867 18044182 ~ 18044454 (-) True G497094
TU570151 lncRNA upstream 157013 18050328 ~ 18051186 (-) False G497099
CI01000340_17700896_17753828.mRNA mRNA downstream 139075 17700825 ~ 17753828 (-) True CI01000340_17700896_17753828
CI01000340_17668871_17688583.mRNA mRNA downstream 203742 17668455 ~ 17689161 (-) True CI01000340_17668871_17688583
CI01000340_17451836_17453987.mRNA mRNA downstream 436920 17451452 ~ 17455983 (-) True CI01000340_17451836_17453987
CI01000340_17354694_17378496.mRNA mRNA downstream 514407 17354254 ~ 17378496 (-) True CI01000340_17354694_17378496
CI01000340_17318768_17326504.mRNA mRNA downstream 566359 17318100 ~ 17326544 (-) True CI01000340_17318768_17326504
CI01000340_17996222_18008569.mRNA mRNA upstream 102119 17995434 ~ 18010838 (-) True CI01000340_17996222_18008569
CI01000340_18013773_18027276.mRNA mRNA upstream 120216 18013531 ~ 18027276 (-) True CI01000340_18013773_18027276
CI01000340_18030360_18041157.mRNA mRNA upstream 136930 18030245 ~ 18041157 (-) True CI01000340_18030360_18041157
CI01000340_18091595_18104080.mRNA mRNA upstream 197493 18090808 ~ 18104080 (-) True CI01000340_18091595_18104080
CI01000340_18185156_18206837.mRNA mRNA upstream 291595 18184910 ~ 18206837 (-) True CI01000340_18185156_18206837
TU569877 other downstream 650164 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 847215 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 1372929 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 1712818 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 2280340 15606741 ~ 15612563 (-) True G495475
TU570236 other upstream 526003 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 1265554 19158869 ~ 19164472 (-) False G497442

Expression Profile