RNA id: TU570103


Basic Information

Item Value
RNA id TU570103
length 225
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G497054
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 17900375 ~ 17900599 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAAAACACGCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCAGCCCCCTTTCCAGAAGAGGGTGGAGCTTTAACAGCTCACGCTTCGGTTGCTCGACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACAGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570102 lncRNA downstream 7060 17892903 ~ 17893315 (-) True G497053
TU570085 lncRNA downstream 30291 17869865 ~ 17870084 (-) True G497037
TU570073 lncRNA downstream 65858 17810886 ~ 17834517 (-) True G497025
TU570068 lncRNA downstream 79952 17778714 ~ 17820423 (-) True G497021
TU569991 lncRNA downstream 304211 17524882 ~ 17596164 (-) True G496950
TU570131 lncRNA upstream 63093 17963692 ~ 17964078 (-) True G497081
TU570142 lncRNA upstream 106056 18006655 ~ 18007015 (-) True G497092
TU570144 lncRNA upstream 143583 18044182 ~ 18044454 (-) True G497094
TU570151 lncRNA upstream 149729 18050328 ~ 18051186 (-) False G497099
TU570149 lncRNA upstream 150129 18050728 ~ 18051186 (-) False G497099
CI01000340_17700896_17753828.mRNA mRNA downstream 146547 17700825 ~ 17753828 (-) True CI01000340_17700896_17753828
CI01000340_17668871_17688583.mRNA mRNA downstream 211214 17668455 ~ 17689161 (-) True CI01000340_17668871_17688583
CI01000340_17451836_17453987.mRNA mRNA downstream 444392 17451452 ~ 17455983 (-) True CI01000340_17451836_17453987
CI01000340_17354694_17378496.mRNA mRNA downstream 521879 17354254 ~ 17378496 (-) True CI01000340_17354694_17378496
CI01000340_17318768_17326504.mRNA mRNA downstream 573831 17318100 ~ 17326544 (-) True CI01000340_17318768_17326504
CI01000340_17996222_18008569.mRNA mRNA upstream 94835 17995434 ~ 18010838 (-) True CI01000340_17996222_18008569
CI01000340_18013773_18027276.mRNA mRNA upstream 112932 18013531 ~ 18027276 (-) True CI01000340_18013773_18027276
CI01000340_18030360_18041157.mRNA mRNA upstream 129646 18030245 ~ 18041157 (-) True CI01000340_18030360_18041157
CI01000340_18091595_18104080.mRNA mRNA upstream 190209 18090808 ~ 18104080 (-) True CI01000340_18091595_18104080
CI01000340_18185156_18206837.mRNA mRNA upstream 284311 18184910 ~ 18206837 (-) True CI01000340_18185156_18206837
TU569877 other downstream 657636 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 854687 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 1380401 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 1720290 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 2287812 15606741 ~ 15612563 (-) True G495475
TU570236 other upstream 518719 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 1258270 19158869 ~ 19164472 (-) False G497442

Expression Profile