RNA id: TU570142



Basic Information


Item Value
RNA id TU570142
length 246
lncRNA type intronic
GC content 0.36
exon number 3
gene id G497092
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18006655 ~ 18007015 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATGATTGGGTCATTATTGCAGTGATTATTATGTTTCTAGCATGCTATATGTTTGGCAACAGTTCTTCTAACCCTAACTGATGGAGTGTGTAGTTTTCATTTCTTAAACAACCATGTAGGAAGACGTATCATGGGAGCATGAAGAATCACTTTCACACATGAATTTGCAAAAAAATCATCAATTTTTGGTCAAGATCTTGTATTGACCATTCAAGAGGTGAGCACTCTGTAAAGTCTATTCCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU570131 lncRNA downstream 42577 17963692 ~ 17964078 (-) True G497081
TU570103 lncRNA downstream 106056 17900375 ~ 17900599 (-) True G497054
TU570102 lncRNA downstream 113340 17892903 ~ 17893315 (-) True G497053
TU570085 lncRNA downstream 136571 17869865 ~ 17870084 (-) True G497037
TU570073 lncRNA downstream 172138 17810886 ~ 17834517 (-) True G497025
TU570144 lncRNA upstream 37167 18044182 ~ 18044454 (-) True G497094
TU570151 lncRNA upstream 43313 18050328 ~ 18051186 (-) False G497099
TU570149 lncRNA upstream 43713 18050728 ~ 18051186 (-) False G497099
TU570150 lncRNA upstream 43713 18050728 ~ 18051186 (-) False G497099
TU570152 lncRNA upstream 43713 18050728 ~ 18051186 (-) True G497099
CI01000340_17700896_17753828.mRNA mRNA downstream 252827 17700825 ~ 17753828 (-) True CI01000340_17700896_17753828
CI01000340_17668871_17688583.mRNA mRNA downstream 317494 17668455 ~ 17689161 (-) True CI01000340_17668871_17688583
CI01000340_17451836_17453987.mRNA mRNA downstream 550672 17451452 ~ 17455983 (-) True CI01000340_17451836_17453987
CI01000340_17354694_17378496.mRNA mRNA downstream 628159 17354254 ~ 17378496 (-) True CI01000340_17354694_17378496
CI01000340_17318768_17326504.mRNA mRNA downstream 680111 17318100 ~ 17326544 (-) True CI01000340_17318768_17326504
CI01000340_18013773_18027276.mRNA mRNA upstream 6516 18013531 ~ 18027276 (-) True CI01000340_18013773_18027276
CI01000340_18030360_18041157.mRNA mRNA upstream 23230 18030245 ~ 18041157 (-) True CI01000340_18030360_18041157
CI01000340_18091595_18104080.mRNA mRNA upstream 83793 18090808 ~ 18104080 (-) True CI01000340_18091595_18104080
CI01000340_18185156_18206837.mRNA mRNA upstream 177895 18184910 ~ 18206837 (-) True CI01000340_18185156_18206837
CI01000340_18228042_18229807.mRNA mRNA upstream 220160 18227175 ~ 18229807 (-) True CI01000340_18228042_18229807
TU569877 other downstream 763916 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 960967 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 1486681 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 1826570 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 2394092 15606741 ~ 15612563 (-) True G495475
TU570236 other upstream 412303 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 1151854 19158869 ~ 19164472 (-) False G497442

Expression Profile