RNA id: TCONS_00022117


Basic Information

Item Value
RNA id TCONS_00022117
length 1523
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_010461
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 9759176 ~ 9761753 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagaAAGACAATGTGAAAAACATCACCACATTACTGAATGATGGTAGGAGAAACAGGCTGCAAACACCACACAAGAAAAAGGCATTTCCGTGACTTGcttatatacatattttgtaCATGTTTTATACACGCCCGATAAAAATATAGTCCTCAAAGTACTTACAGTTGTCAGTCATAGTTCCTGACACCATCAGACATTCAGATGTAGAAAAGCCCAGCAAGAGCTTTCacagattttaaaatgaatagaACTTTACCATGGACATTCCCTAaacacataaaatacaaaatatgctTTATATTGTCAAGAACTTCCCTCTGACCTGAAATAAAATACATAGTAAGATCACGAAAACTACTGCCAGATTACAAAGCCTATTACAATCATTTATATGGTACATAGAGAATTGAAAATCCATTCAGTTCTGCAAAGGCAAATCCTTTGCAAATATTCACTTCGGTCCCAAACTCCAATGGTTTTAAGAGCTGCAGTTTCGCCAACGGTTTTATTTGGGACAACGCGATACTGTTCGAGACTACAGCCAGCCCTTCATCTAAATGTTTCAAGAGTGCAAAGCCAGTCTGAGATCTTAGCGTGTGCAAGAGGTATCAAGAAGCCTGAAATGCTTCAGACTACACTATTTCCATTACAGTCACTGAGAAACTCGAAGTACAGGCTGTCAAAATTATTCGTTTTCTTTAATAAACAAAGCTCTGATGGATAGAGATTCATCAGGCAACAGTTTCCTTTGCGTCTGCTCTATAAACTAGTGTTTACATTACTTCATTAGTGTCTATTTTCCTTACTCggtttatatgcttatttattcTTAAGAGTCTAAACAGCACAAATGTATCAAAGAAATTCCCCATGGTTAAAAAAGATTTTCCATCATTTGAACTGGAAATTGCAGCAATATATCAAACTGGAATGTAAATTTGCCAACATTCCTGATATTGATGAAAAAATTCCCAGTCTGGTCTACACATTACAGGGTTTTGTGGGATTCTAGAAAACACTTGAATGAAAAACATCGTGTAACAAAATCCTCAGTGACGGCATACCCGAAATGTAGCAGATCATGTTGGTCCTTATGTTTGGAGGCCATGTAAGTTTTGAAAATGAGTGTTTTTAATACCAACACGCTGCATTAAGGCAGATGACTGGAAGACATCATGGCACGATCTAGAAATCAGTCTAACGCAACATGTTTGTTAAAAGACAATAGCTGCTGTGCTAGAGGAGCACATTAGTAGCATGTTATAACATACCAGGACACAGaaggaataattatttacagAATTATATACATAAACAACACGCAGATATTAGGCGGCCCTCGGTATGGCGGCAATATGTGCGTTGATTAAATAACGAAAACGACGTGCAAGCGGGTCTGTCCGTTTCTCAAAGGTGAAAGCTGATTGGTCCAATGTGCAGGAGCAACTTTCAATAGGACAGGGTGGGAAGAAAAGGCAAATGCATAGAGATGCTGAGTTGATGTGAATTAAACAGCTTCAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020541 lncRNA downstream 192805 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020539 lncRNA downstream 317173 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 1079714 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00022115 lncRNA downstream 1194075 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00020523 lncRNA downstream 1455997 8300824 ~ 8303179 (-) True XLOC_010448
TCONS_00022118 lncRNA upstream 251232 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00020554 lncRNA upstream 303173 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00020557 lncRNA upstream 443357 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00022119 lncRNA upstream 659417 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022120 lncRNA upstream 659417 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00020543 mRNA downstream 64354 9680908 ~ 9694822 (-) True XLOC_010460
TCONS_00020542 mRNA downstream 83194 9672126 ~ 9675982 (-) True XLOC_010459
TCONS_00020538 mRNA downstream 305585 9433738 ~ 9453591 (-) False XLOC_010457
TCONS_00020540 mRNA downstream 309464 9446920 ~ 9449712 (-) True XLOC_010457
TCONS_00020536 mRNA downstream 333725 9421002 ~ 9425451 (-) False XLOC_010456
TCONS_00020544 mRNA upstream 25630 9787383 ~ 9802998 (-) False XLOC_010462
TCONS_00020545 mRNA upstream 32115 9793868 ~ 9802449 (-) True XLOC_010462
TCONS_00020546 mRNA upstream 45510 9807263 ~ 9830451 (-) True XLOC_010463
TCONS_00020547 mRNA upstream 71503 9833256 ~ 9897613 (-) False XLOC_010464
TCONS_00020548 mRNA upstream 73258 9835011 ~ 9879407 (-) False XLOC_010464
TCONS_00020535 other downstream 456982 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1280167 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1363617 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1470729 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 2062960 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 493454 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 1068056 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 1154537 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1999166 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 2250321 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

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