RNA id: TU570093


Basic Information

Item Value
RNA id TU570093
length 2706
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G497044
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18162350 ~ 18166938 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAGTCAACAGTTATATTTATTGCAATTTTATATACAAACAACCCTAAAAGGCACTGTTTAAATAAGGATATAATGATTTTCCTTTTGATAACTAACATAGGTTGAATATAGCTTAGTTTGAATTATATATTAAAATTTAGTACAATGTAAAAAAGGCCACATGAAGGATATTTTCCACCTCAGCAAGATGGGGCCGTTTCGTTTTTTAAAAGTACCTCTCTGAGAAGAAAAAATTTGCATATCTCCGTCACAATGTAATGAGACAAAAAGAGCATGTGAAAACAGGAAGACATCCTTGAGGAATACAGCCGAACATCACTGCACATCCATCATTATTCACACAAATCAGTTAGAAGAAGGTTCAAAAGGAAGAAAAACGACATAAGAAGATATTGCATGAAAGAGGCTGTATTCAGAATGGAGTACTAGCATACTGTGCAGTATATACTGCGTACTGCCTGCGGTTTTCAAAACAGTATGCATTGTGCAACAATAAACATTTTTATTTCAGCAGCGTCTGCTTATCCCAGAAGGCATTCTGGCAAGGACTTCTCTCAAAGTCAAGAATAAACGTTCTTTCAGTAAAATTAATGCAAGTATGTGTAAAAATGTCACTTTTTGGTGTCGGATCAAATGATGATTGAAGAAAAATCAAACTCTGATGCATTTATCAAAAAGGAAATGGAAGGTCAAGTGCACTGCATTGTGGTGTAGAGTTTTCTGTGCTCATTTTGGCAACTGTAGTATGTTGTAGTACATACATGTAAATGTAGTATGCATGCAGAAAACTCATACTGTGCACAGTATACTGCAGAAGTAGTATGGGTAGTATGCTATTCTGAACACAGCCGGAGAGGTCAGATCATGTGGACAGTACTAATGCTCGTTATGCCCACTAGAGGTCAGTGTGACTTAGTTATTTAACATGAATTCAATCCACAAACTGAATTACAAGCATTTCTCAGATCTAACCACTTCTAGTGAAGGTTTGTCCAATTTCTGAATTACAGTTCCCAGTTTTGTAGTTTTGGCTTGTAAAATAAAGAAAGAGTGAGGCATAACCATATTTCCCTTACAAAATCCATTTACCATATAAATACTATGGTATATGAATATGGTAGTCATGAAGTACCACGGTATTTAGGGATGCACCGATATGAAAATTGTGTCCGATACGATAATTCTTTATATTTGAAAGCCGATAACCAATATATTAACCGATAAATCTAAATCAAAATTTTTATATAGTTTTATGTATTTTATGTATTTTTTTTACGTAGCCTATATGACAGACTTGCTCTGCACTGCTGTATTTTCCTTTTTGAAGTGTTTTTTAAATCATATTCCAAGCAAATCAAAACCATCATGGTGGACAGTGCGCATCTGAAATTAACATATATTGTCCGATACCGATATGGTGGCCGATATATCGTGCCATCCCTAAATTACCATCTGAATCCATCACTGTACCATGGTACTACCACCATAACTTTTTTGTAAGGGTTTGACAGGTTGCATAGATTCATAGCAGATATTCTGGAAGACGACGTATCTTTAAAAGGTTATATTTAAAGTAAGAAGAAAGTCAAATTAGTTTTTTCTCACCGTAGAAAGATTTGAGATTTAATTTCTCAAACCGCTCTCAGCTGCCAAACGTTAAAGCCCTTTCTATGATCAGAGCAGCTGCGTTTTTCACAGTCTCGCACAACTGGAATATCAACAAAACCGTGAAATACTAGCTCTGTTCAAAAACCTAGTGAGCTGCCTACTTAGACAGCATTTTAAGGGATCATAGGAAGGCTAGCAGCAAATCGCTTGGGGGATAAATCTATATAAGATGGTGCTGAGACAAGAGAAATAATACTATTAAGTGTTTAATTATTTATTATAAAGTTTATTGATTTAATTATAATCATTCAATTTTATTTTATTAGAATTACAATGGACTATTTTATGTTTGTTTTTATGCTTATTGCATAATTTTATGCTATTGCTTCATCATAGCAATGTAAATGTCAAAACATAACATTATTTGTGTCGCATCCAGAGGTGCTGCCTATCTAGTGCGTGTCAAATCAGTTCAGACTGGATGCTGTCTATGTAGACTCACTAGGTTCTAGAACAGATTTTAACATCTTGTTTTGTGTCTGTTGCCGCTCTGAAAACATATGATTAATGCGATTATGTTTTTAAACATTCATAAAGTTTAGCTGAGATACAAACCAATAAAATGAGAAAGAATAAAAATGTCAGAGCTATGAGGAAAACAGAGAAATCGTCACTGAATGGCTTTAGGTTTTGGCCGTCCGTGTCTGAACACTGACCCGTGACAGTCTGTGATGGAAGATTTGGTTTGATGTCCAGTGGTCCGCCGTTACGCCAGCAGCCCTAGTCGCTTGACCTTGGCCGACAGGAAAGAGTGAATGATGAAGACGATGGTTTTAGGGCAGGAGTGAAGGTCCAGTTGCTGAAAACGATCTCTGCTTCTGGGCCTCCGAAGTCGAGGAACATCATGCGGACGCCGTCGTCTGAGGACATGCGCAGACGCTCGAACGGCTGCTGGAGAAGGATGTTCTTCCTGACGCCGGCCTCCTCCGTAAACAACAAGAAGCCTTTGTCTATGTGAACGCTCAACATACACGACTTCCCGTTCCAGCTGCACGCTACAAAACACACAGGATGATTAGCTTTAATTAGCTAGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570161 lncRNA downstream 97265 18064125 ~ 18065085 (-) False G497105
TU570162 lncRNA downstream 97265 18064125 ~ 18065085 (-) True G497105
TU570151 lncRNA downstream 111164 18050328 ~ 18051186 (-) False G497099
TU570149 lncRNA downstream 111164 18050728 ~ 18051186 (-) False G497099
TU570150 lncRNA downstream 111164 18050728 ~ 18051186 (-) False G497099
TU570188 lncRNA upstream 131531 18298469 ~ 18351804 (-) True G497130
TU570230 lncRNA upstream 244342 18411280 ~ 18411572 (-) True G497171
TU570232 lncRNA upstream 247535 18414473 ~ 18414707 (-) True G497173
TU570237 lncRNA upstream 251815 18418753 ~ 18419030 (-) True G497177
TU570249 lncRNA upstream 313427 18480365 ~ 18481338 (-) True G497188
CI01000340_18091595_18104080.mRNA mRNA downstream 58270 18090808 ~ 18104080 (-) True CI01000340_18091595_18104080
CI01000340_18030360_18041157.mRNA mRNA downstream 121193 18030245 ~ 18041157 (-) True CI01000340_18030360_18041157
CI01000340_18013773_18027276.mRNA mRNA downstream 135074 18013531 ~ 18027276 (-) True CI01000340_18013773_18027276
CI01000340_17996222_18008569.mRNA mRNA downstream 151512 17995434 ~ 18010838 (-) True CI01000340_17996222_18008569
CI01000340_17700896_17753828.mRNA mRNA downstream 408522 17700825 ~ 17753828 (-) True CI01000340_17700896_17753828
CI01000340_18185156_18206837.mRNA mRNA upstream 17972 18184910 ~ 18206837 (-) True CI01000340_18185156_18206837
CI01000340_18228042_18229807.mRNA mRNA upstream 60237 18227175 ~ 18229807 (-) True CI01000340_18228042_18229807
CI01000340_18302048_18303998.mRNA mRNA upstream 134450 18301388 ~ 18304048 (-) True CI01000340_18302048_18303998
CI01000340_18408556_18408855.mRNA mRNA upstream 241584 18408522 ~ 18408855 (-) True CI01000340_18408556_18408855
CI01000340_18419431_18419838.mRNA mRNA upstream 252120 18419058 ~ 18421201 (-) False CI01000340_18419431_18419838
TU569877 other downstream 919611 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 1116662 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 1642376 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 1982265 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 2549787 15606741 ~ 15612563 (-) True G495475
TU570236 other upstream 252380 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 991931 19158869 ~ 19164472 (-) False G497442

Expression Profile