RNA id: TU570352


Basic Information

Item Value
RNA id TU570352
length 616
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G497271
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18733663 ~ 18821869 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGATTCTCACAGCCAGACCTTTGATTATTGGTATAAAGTCTGCTTTGACCTTAAAGGGGACCTTTAATGCCCCTTTCACAAGATGTAATATAAGTCTCTGGTGTCTCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGACAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACGTCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCAACAACAACAAAGCCGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCCACTAGCATGTGCCGTCATGTTAATCTTTTGTGTTGAATTGACCCTCGTTTGTGAAACAGTCCGGTGTAAAATGACGGCATGACAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570328 lncRNA downstream 21532 18647782 ~ 18712131 (-) True G497252
TU570337 lncRNA downstream 46156 18687208 ~ 18687507 (-) True G497257
TU570302 lncRNA downstream 63360 18669212 ~ 18670303 (-) True G497229
TU570327 lncRNA downstream 87196 18645497 ~ 18646467 (-) True G497251
TU570280 lncRNA downstream 139777 18588904 ~ 18593886 (-) True CI01000340_18587476_18607063
TU570389 lncRNA upstream 93477 18915346 ~ 18966510 (-) True G497288
TU570500 lncRNA upstream 264559 19086428 ~ 19087628 (-) True G497393
TU570547 lncRNA upstream 332964 19154833 ~ 19155257 (-) True G497440
TU570549 lncRNA upstream 338367 19160236 ~ 19166778 (-) False G497442
TU570551 lncRNA upstream 343994 19165863 ~ 19166778 (-) True G497442
CI01000340_18706881_18719031.mRNA mRNA downstream 14632 18706071 ~ 18719031 (-) True CI01000340_18706881_18719031
CI01000340_18654497_18656059.mRNA mRNA downstream 77604 18654450 ~ 18656059 (-) True CI01000340_18654497_18656059
CI01000340_18587476_18607063.mRNA mRNA downstream 126530 18587330 ~ 18607133 (-) False CI01000340_18587476_18607063
CI01000340_18572454_18585230.mRNA mRNA downstream 148433 18572454 ~ 18585230 (-) True CI01000340_18572454_18585230
CI01000340_18540426_18543271.mRNA mRNA downstream 189363 18540261 ~ 18544300 (-) True CI01000340_18540426_18543271
CI01000340_18871236_18880189.mRNA mRNA upstream 49075 18870944 ~ 18880189 (-) True CI01000340_18871236_18880189
CI01000340_18900583_18906154.mRNA mRNA upstream 77808 18899677 ~ 18906154 (-) True CI01000340_18900583_18906154
CI01000340_19062314_19072746.mRNA mRNA upstream 239216 19061085 ~ 19072746 (-) True CI01000340_19062314_19072746
CI01000340_19115929_19119348.mRNA mRNA upstream 293736 19115605 ~ 19119348 (-) True CI01000340_19115929_19119348
CI01000340_19142339_19149140.mRNA mRNA upstream 320017 19141886 ~ 19149140 (-) True CI01000340_19142339_19149140
TU570236 other downstream 278983 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 1490924 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 1687975 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2213689 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 2553578 16179988 ~ 16180085 (-) True G495611
TU570552 other upstream 337000 19158869 ~ 19164472 (-) False G497442

Expression Profile