RNA id: TU570389



Basic Information


Item Value
RNA id TU570389
length 3746
lncRNA type read_through
GC content 0.38
exon number 2
gene id G497288
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18915346 ~ 18966510 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATTTTTCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCGGGACATGCGTATGAGCAAGTGAAAACATGAATTTTTCAAATAGTTAAGAGAGAGTTAGTTACTTTGCTTCATGACCATGTGGTCCTGAATGATGTCACATCCTGTTACATGATATTGACCGCATGACTTGATCCAAAATGGTCCCTTTATATCGGTTACTCTGAATTTTCGCAATGGTTTTGTTTGCGATAAGCAGTCCTGAATAACAATAATATTCAGTGTTTTGCCAAGTCCAAATTTAAAATGTCAATTCAATCTTTGTGAGGAAAAGAATGGCGATAAATGGAGATGAGATTGTATCAGCACAAGCCCTAGTGACCGACAGTGAACCTTTGTCTGGACACTTACTCCTCATTGCGGTCAATCGGTGCCAGTTTGAGTGCCAGTCTGTGGCATATGCCAAGCTAATGCAATAATCCTGAATGCCTTTTTCTGTATCTTTATTTGAAACGGTTGTTTGAAGGTTTTGCTGCTCGCTCTGTCTCTCTCTCTCAGCTGAAGCAGCAGGAGGATGGATGAAAATAGACATGTTTTTCCACACCGTCGAGGGCTGAGAGAGTAGAAACTGTAGGAAGAAGAGGGAAAGGATGGGATACAGTGGTACCTGAGCAGATGGAGTGGCACAGCGTGAAGCGGCCAGTGCCAGGGATAAACACGTCACAGAGGGCACCGCTACTGAAACAGGCTCGATCAGCCATTTCAGATGATTACGTTAAATATATTATGGTGCATTTTTAATTTTGAGAACTGCATAAAACCATCTTAAATGATTTATTTGGGACGGGTGATGGTGCATATGTTCATGTGCAACTACTGATTCTCAAAATGTACTCGGTGGGTTGTCAATCTTGAAGAAGTCCTCTAAAATTAGGCTGGTTTAGTGGTCATGTCGCCTGGACTCTGATGCGTTTACTCTAGTTACTGTTAGACTGCATGTGGAAACCCTGAGAAGTTGATTCTCTCAATTGATTCCCTTTAAAGGATTAGTTCAATTTTAAATGAAAATTAGCCCATGCTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCATCTTTCTGATGAACACAATCATTAATAAATATTCTGATGCATCCGAGCTTTATAATGTCAGTGAGCGGAATCAACAAGTATGAGCTGAAGAAAGTGTCTCCATCCACATCCATCCATCATAAACGCATTCCACGCGGCTCTGAGGGTTAATAAAGGCCTTCTGAAGCGAAGTGATGTGTTTGTATAAAAAAAAAAAAATCCATATTTAACAAGTTGTGAAGTAAAATATCTACCTTTTGTATTCAAATTACGAAAAAAACTGAACTGGTGTCACGTCAGTTAAGCTTTTCTGTAAGTTGAATAGGGAAGGTGTAGGACGTAGCGTAAGCTTTTTGAGCTTTGTTGTCCTGATAAAATGATTGGAACTGAAAGTTGAGATGCATTTCTACTTTAAACATTGTTTATTCTTCAGACATTCCTCTTTAAATGCAATAAGTATCAGCTATGTGAAGTGAACCACATTTGGTTTTCGATCACTGAAAATGTGGTCAAATTCAACAATTTGTACATGGAGTCACATTTGGGGTCTCAATATCTATGGGACTGAACTATATAGGGCCTTAAAAATGAAGATTCCAAAAGAAAAGTTTATTAAGAATGAGAATCTAGAAGGATATTAAGATATCTTGAATACTTTTAGAGATACAGACATGCAAACTTTGGAAAAGGAACATTTATGGCACTCAGACAGGTATGTTCAATGCAATTGAGATGATAGAAAAACACAAGATGTATTTCTAGTTTTAACATTATTTGTTCTTCAGATATTCCTCTTTAAAATAAAAGAAGTATCAGCTGTATGCAAAGTGACCCACATTTAGATTTTGACCACTGAAAATGTGTACAGTTGACCAATTTACTCATGGAGCCGCATTTAGATCTCCATATCTCTGGGATTGAACCATCGAGGGCCTTTAAAATGAAGATACCAAAAGAAAAGTTTAAGAACCAGAATCTAAAAGGATATTAAGATATCTTTAATACTTCTCGAGTTACAGGCATGCAAACTTGAGGCAAAAAACCACAAGAAGTGCTTTTTGCCATTGTTGAACGATCACCGTTGGCATATAATGAAACAAAGATTGATAAAGTCAACAGATTTTACTAATAGATCTACCAATCTCTGTGTGAAAATAAAATAATGATGCTGCCATCTTTCTAAAGTCATTTTTACGCCCCTCTAATTTAATCCAAATCTCAGGTGAAAATGGTCAGTTTAACCCCCTCTACAAAATAGTGGATTACTCAGTAAATATACATCTGTGACATTTAATATTTTGGCTTTCTACAGAAAAAATATTAACGAAATCAAAAATTTGAGCCAGGGTCCTCTGGTTGAGTTGACATGGAATGACCATATATGCGTATGTAATAGCACACACTGCTGTTTTGTTGTCTATCACTTTAAATGGTTGCACACTTTAAAGCAGGATGGATTCTGATTGGCTGTCAATGTATTTGTTTTTTAAAATTGCTCTGAAAGTGATTCCAAGGATATTCCTCAGTGTTTGTAATGTTATACTTGTGGTGTGGACTTCGCTATTAGAGTGATTATTAAAATTTATGGTTCTAGTTATCATTCTTGGGCATTTTAAGGATGAACAACACAATCAATCTGTAAACATACAGCACTGATTAGTGGCACTTGTTTGTCAGTGTTAATTGGCTGAGATTTGACTGGCCAGCAGAAGTCTTGATTGTGTTTCAGCTTGCGCCGACTCTGTTACAGAAATAGCCAACATTATTGGCTGTTATTTCGCCTACTACCTGTGTCAGCCTGAAAGGAACAGAAAGACATGATTGGCGTTCCTCTCGGTCTGAAGGCTGCACAAGCGCCTGTTCTGACGGAGAGAGAATGCAGGGGCGTGACGGGTGGAGTGTGTGTGTTCTGCCCTCCAAATACACACTCGGGTAATTGGGGTGTGTGTGTAATTGGGGTACGGGGCAGATGTGCACCACATGGGGCGGAGGGAGATCTATTCTCTCTTGGTGACAGAGCCTGTTGCCATGGAGCTCCTCGTCCTATTGGCGGAGGCCTCGTCCAATAGGGCGTCAGTTTCATCATTGAGAATTTTCTCTCTGTCTCAAACGGAGGGAAGTGGAGATTGCATAAGGGTTGTAATGGGAGCCAAATCAGCCCCAGATTTCAACCTGACACACTTATTTTTAGAGAATAAAAGATGGAGATAGGCTGAACGATATCTCTCCCACACAGAGTGAGTGATGCATCATGGTCTAGCAGAGCACTCTTTGTGTTATTCATGGTTTTAAGTTCCTGTTCTTCTTGGTCTGGGTCAGGATTATTATTAACTAAAACCATAAAAACATTTTCATCATTAAAAATACTAGTTGCAAAAGCAATATTTCTCATTTTTGTTTAGCGTAAGGTAAGCAGCAGGAAGATGTTAAGTTAACTAAACTATGTAGACTTTTAAAAACCTAATAAAAATGACAAAAACACATCTTTTTACGTCATAAATGGGTAACCTTAATGCAGTGGTGACTTCTATAGCAAATATGATTTTTGTATCCCCATTTGCTGTAATGGCAAAAGAAAAAATACACAATGACATTTCCAAAAAGGATTTTTTAAAATTATATTTAGTTCAATTACAGTCAGATACAGAGTCAAAAATATAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU570352 lncRNA downstream 93477 18733663 ~ 18821869 (-) True G497271
TU570351 lncRNA downstream 104178 18733663 ~ 18811168 (-) False G497271
TU570368 lncRNA downstream 166605 18745522 ~ 18748741 (-) True G497279
TU570328 lncRNA downstream 203215 18647782 ~ 18712131 (-) True G497252
TU570337 lncRNA downstream 227839 18687208 ~ 18687507 (-) True G497257
TU570500 lncRNA upstream 119918 19086428 ~ 19087628 (-) True G497393
TU570547 lncRNA upstream 188323 19154833 ~ 19155257 (-) True G497440
TU570549 lncRNA upstream 193726 19160236 ~ 19166778 (-) False G497442
TU570551 lncRNA upstream 199353 19165863 ~ 19166778 (-) True G497442
TU570554 lncRNA upstream 201565 19168075 ~ 19168375 (-) True G497444
CI01000340_18900583_18906154.mRNA mRNA downstream 9192 18899677 ~ 18906154 (-) True CI01000340_18900583_18906154
CI01000340_18871236_18880189.mRNA mRNA downstream 35157 18870944 ~ 18880189 (-) True CI01000340_18871236_18880189
CI01000340_18706881_18719031.mRNA mRNA downstream 196315 18706071 ~ 18719031 (-) True CI01000340_18706881_18719031
CI01000340_18654497_18656059.mRNA mRNA downstream 259287 18654450 ~ 18656059 (-) True CI01000340_18654497_18656059
CI01000340_18587476_18607063.mRNA mRNA downstream 308213 18587330 ~ 18607133 (-) False CI01000340_18587476_18607063
CI01000340_19062314_19072746.mRNA mRNA upstream 94575 19061085 ~ 19072746 (-) True CI01000340_19062314_19072746
CI01000340_19115929_19119348.mRNA mRNA upstream 149095 19115605 ~ 19119348 (-) True CI01000340_19115929_19119348
CI01000340_19142339_19149140.mRNA mRNA upstream 175376 19141886 ~ 19149140 (-) True CI01000340_19142339_19149140
CI01000340_19194730_19198554.mRNA mRNA upstream 226855 19193365 ~ 19198554 (-) True CI01000340_19194730_19198554
CI01000340_19213032_19215967.mRNA mRNA upstream 245851 19212361 ~ 19216620 (-) True CI01000340_19213032_19215967
TU570236 other downstream 460666 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 1672607 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 1869658 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2395372 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 2735261 16179988 ~ 16180085 (-) True G495611
TU570552 other upstream 192359 19158869 ~ 19164472 (-) False G497442

Expression Profile