RNA id: TU570500


Basic Information

Item Value
RNA id TU570500
length 1201
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G497393
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19086428 ~ 19087628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACTTTCGTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCGGGAGCAGCAGCTCATTTGCATTTAAAGAGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGAGACACCAGAGACTTATCTTACATCTTGTGAAAGGAGCGTTACAGGTGCCCTTTAAGGGTCATTTAGCATCCTGTTTTATAAGCATATGAGGATTATCAGTAACCCTACACATTCACACACACACACACACACACACTGTTTTCTCCAGTCAGTTGGTGTTGTGTCCTGCAGTGAGCATTAACCTGTCGTCCATCCGCAGTGAACTTCCTCTGAGCCACAGAGAGACAGACGAACGCTTCATCATTCTTCAGTGTGACGCGGTCTTTGTAATGTTTTCTAAAAGCCTTTCTGTGTTGTTAACAGGCAGCATGCGGTTTCTCTCTCTCTCTCTCTCTGTCTTATACAAGGGAAGTCCATTGGCAGATCAGTTCACACACCACAAATATCAGTCGCCTCAAACTCCCCCTCAGAGTCAGTGCTGGGAACTGAGGGAAGTGATGTCATGTTTGAAAATCCGACGGAAGCTCACTGAGGTTCAGAAGTTCTCAAGTGAAGCTAGATAATAGATTCTTGCTGATTACAGATTATTGGACTATCGCAAATTACTTTTCTAGTTTTGTATAGGGCTGCATTTCATATCCTCATATCCACATTTCATATCCTCATTCATATCCATTTCATATAAAGGATTGGTTCACTTCAGAATGAAAATGTCCTGATAATTTACTCACCCCCATGTCATCCAGGATTTTTCTCCATATAGTGGACTTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570389 lncRNA downstream 119918 18915346 ~ 18966510 (-) True G497288
TU570352 lncRNA downstream 264559 18733663 ~ 18821869 (-) True G497271
TU570351 lncRNA downstream 275260 18733663 ~ 18811168 (-) False G497271
TU570368 lncRNA downstream 337687 18745522 ~ 18748741 (-) True G497279
TU570328 lncRNA downstream 374297 18647782 ~ 18712131 (-) True G497252
TU570547 lncRNA upstream 67205 19154833 ~ 19155257 (-) True G497440
TU570549 lncRNA upstream 72608 19160236 ~ 19166778 (-) False G497442
TU570551 lncRNA upstream 78235 19165863 ~ 19166778 (-) True G497442
TU570554 lncRNA upstream 80447 19168075 ~ 19168375 (-) True G497444
TU570450 lncRNA upstream 218615 19306243 ~ 19363326 (-) True G497343
CI01000340_19062314_19072746.mRNA mRNA downstream 13682 19061085 ~ 19072746 (-) True CI01000340_19062314_19072746
CI01000340_18900583_18906154.mRNA mRNA downstream 180274 18899677 ~ 18906154 (-) True CI01000340_18900583_18906154
CI01000340_18871236_18880189.mRNA mRNA downstream 206239 18870944 ~ 18880189 (-) True CI01000340_18871236_18880189
CI01000340_18706881_18719031.mRNA mRNA downstream 367397 18706071 ~ 18719031 (-) True CI01000340_18706881_18719031
CI01000340_18654497_18656059.mRNA mRNA downstream 430369 18654450 ~ 18656059 (-) True CI01000340_18654497_18656059
CI01000340_19115929_19119348.mRNA mRNA upstream 27977 19115605 ~ 19119348 (-) True CI01000340_19115929_19119348
CI01000340_19142339_19149140.mRNA mRNA upstream 54258 19141886 ~ 19149140 (-) True CI01000340_19142339_19149140
CI01000340_19194730_19198554.mRNA mRNA upstream 105737 19193365 ~ 19198554 (-) True CI01000340_19194730_19198554
CI01000340_19213032_19215967.mRNA mRNA upstream 124733 19212361 ~ 19216620 (-) True CI01000340_19213032_19215967
CI01000340_19231651_19244239.mRNA mRNA upstream 143263 19230891 ~ 19244964 (-) True CI01000340_19231651_19244239
TU570236 other downstream 631748 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 1843689 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 2040740 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2566454 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 2906343 16179988 ~ 16180085 (-) True G495611
TU570552 other upstream 71241 19158869 ~ 19164472 (-) False G497442

Expression Profile