RNA id: TU570547


Basic Information

Item Value
RNA id TU570547
length 364
lncRNA type intronic
GC content 0.47
exon number 2
gene id G497440
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19154833 ~ 19155257 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACACCGGACTGCTTCACAAACGAGGGTCAATTCAACACAAAAGATTAACATGACGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCGACCGAAGCGCGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570500 lncRNA downstream 67205 19086428 ~ 19087628 (-) True G497393
TU570389 lncRNA downstream 188323 18915346 ~ 18966510 (-) True G497288
TU570352 lncRNA downstream 332964 18733663 ~ 18821869 (-) True G497271
TU570351 lncRNA downstream 343665 18733663 ~ 18811168 (-) False G497271
TU570368 lncRNA downstream 406092 18745522 ~ 18748741 (-) True G497279
TU570549 lncRNA upstream 4979 19160236 ~ 19166778 (-) False G497442
TU570551 lncRNA upstream 10606 19165863 ~ 19166778 (-) True G497442
TU570554 lncRNA upstream 12818 19168075 ~ 19168375 (-) True G497444
TU570450 lncRNA upstream 150986 19306243 ~ 19363326 (-) True G497343
TU570482 lncRNA upstream 260196 19415453 ~ 19420039 (-) True G497375
CI01000340_19142339_19149140.mRNA mRNA downstream 5693 19141886 ~ 19149140 (-) True CI01000340_19142339_19149140
CI01000340_19115929_19119348.mRNA mRNA downstream 35485 19115605 ~ 19119348 (-) True CI01000340_19115929_19119348
CI01000340_19062314_19072746.mRNA mRNA downstream 82087 19061085 ~ 19072746 (-) True CI01000340_19062314_19072746
CI01000340_18900583_18906154.mRNA mRNA downstream 248679 18899677 ~ 18906154 (-) True CI01000340_18900583_18906154
CI01000340_18871236_18880189.mRNA mRNA downstream 274644 18870944 ~ 18880189 (-) True CI01000340_18871236_18880189
CI01000340_19194730_19198554.mRNA mRNA upstream 38108 19193365 ~ 19198554 (-) True CI01000340_19194730_19198554
CI01000340_19213032_19215967.mRNA mRNA upstream 57104 19212361 ~ 19216620 (-) True CI01000340_19213032_19215967
CI01000340_19231651_19244239.mRNA mRNA upstream 75634 19230891 ~ 19244964 (-) True CI01000340_19231651_19244239
CI01000340_19247600_19253297.mRNA mRNA upstream 92216 19247473 ~ 19253297 (-) True CI01000340_19247600_19253297
CI01000340_19254583_19259959.mRNA mRNA upstream 98969 19254226 ~ 19259959 (-) True CI01000340_19254583_19259959
TU570236 other downstream 700153 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 1912094 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 2109145 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2634859 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 2974748 16179988 ~ 16180085 (-) True G495611
TU570552 other upstream 3612 19158869 ~ 19164472 (-) False G497442

Expression Profile