RNA id: TU570450


Basic Information

Item Value
RNA id TU570450
length 921
lncRNA type read_through
GC content 0.49
exon number 2
gene id G497343
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19306243 ~ 19363326 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGTTTGATGATCTGTTTGATGAGGTCGGGGTGCGTGGCCTTCAGGTAGGAGCTGGCCGGCTGGTTGAGCTCGAACTCGAAGCACCTCCAGAGCTCCGGCATGTGGAAGGCCTGGTTCCAGCCGCGGCACACCTGCGAGGCGAAGGCCCGGTCCAGCAGCGGCAGGTACTGGAAGATCTGCAGCAGGATCTCCTCCGGCAGCTGCCGCCAGTCCACCTGCCCGTCCTCGTCACACCGCTCCTCTGAATCGCCCCGCCGGAGCCTCTTGCAGACCTCAGGGGCCCCGGGACCTGGCCCCGACACCGACCCGCCTCCCTCCTCCACTTGATCGCCTCTCTTCTGGCCTCTTTTCATCCTGGAGAAACACATGAACAGTGATTATGTTCAGAATGGAGTACTACACACTGCATACTAGATTAGATTTGCGAGATAAAAATGTAGAATTGTGAGATATAAACTCGAAATTAATTAGTTTTATTCCGTGGCTTCCACAGACTGCTTCTGCAGAACTGCCATTTTCTGCCCCAGACAGGCAACAAAAAAACGTCATTGTTGTTTGCAAACACAAAATAGGTCTACAGCACGTCATGTGGTCAGTTAACGTCATGTTCAGCTTGTGCTCGTAAAGATTACAATATAAGGATAATAAACAACATCAGAATGTTTACTTGTACGCAGCTGTATGTCTGAGCAGATACTCCCAGTTTCTTCACTTTCATCAAGGATTCAGTTCAATTTTTACTCTATAATTAACTGTGATTAACAAGATCCGCTGTGATCTTCTGAGTTCATCTAACCACACATGATGGATTAACAAGCATTTGTCACAAACACATTCAAGCATGAATGAACTAAACAGAAATCAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACACGCCCATCACGAGGCGCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570554 lncRNA downstream 137868 19168075 ~ 19168375 (-) True G497444
TU570549 lncRNA downstream 139465 19160236 ~ 19166778 (-) False G497442
TU570551 lncRNA downstream 139465 19165863 ~ 19166778 (-) True G497442
TU570547 lncRNA downstream 150986 19154833 ~ 19155257 (-) True G497440
TU570500 lncRNA downstream 218615 19086428 ~ 19087628 (-) True G497393
TU570482 lncRNA upstream 52127 19415453 ~ 19420039 (-) True G497375
TU570448 lncRNA upstream 66035 19429361 ~ 19431737 (-) True G497341
TU570457 lncRNA upstream 85113 19448439 ~ 19451285 (-) True G497350
TU570458 lncRNA upstream 128598 19491924 ~ 19494481 (-) True G497351
TU570594 lncRNA upstream 140475 19503801 ~ 19550929 (-) True G497479
CI01000340_19288790_19292748.mRNA mRNA downstream 12846 19288096 ~ 19293397 (-) True CI01000340_19288790_19292748
CI01000340_19280383_19285904.mRNA mRNA downstream 20339 19280228 ~ 19285904 (-) True CI01000340_19280383_19285904
CI01000340_19267148_19271146.mRNA mRNA downstream 35097 19266637 ~ 19271146 (-) True CI01000340_19267148_19271146
CI01000340_19254583_19259959.mRNA mRNA downstream 46284 19254226 ~ 19259959 (-) True CI01000340_19254583_19259959
CI01000340_19247600_19253297.mRNA mRNA downstream 52946 19247473 ~ 19253297 (-) True CI01000340_19247600_19253297
CI01000340_19382181_19383365.mRNA mRNA upstream 18646 19381972 ~ 19383454 (-) True CI01000340_19382181_19383365
CI01000340_19456344_19458688.mRNA mRNA upstream 92705 19456031 ~ 19458688 (-) True CI01000340_19456344_19458688
CI01000340_19512374_19526344.mRNA mRNA upstream 147195 19510521 ~ 19526344 (-) True CI01000340_19512374_19526344
TU570552 other downstream 141771 19158869 ~ 19164472 (-) False G497442
TU570236 other downstream 851563 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 2063504 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 2260555 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2786269 16519911 ~ 16519974 (-) True G496628

Expression Profile