RNA id: TU570457


Basic Information

Item Value
RNA id TU570457
length 2294
lncRNA type read_through
GC content 0.41
exon number 2
gene id G497350
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19448439 ~ 19451285 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTATTTGCAATTGCCAACTTTAATTTGGTAAAATCATACGATAAACACACATCTCATTTTTCGTGCAGTGCACAGCCTCTAAACTAGTACATAAAGCAAATACTCTAACTCTAAGGGCTCCGGTGATGTTCTTTCACATGATTTGGTAAATTAAAAGCCTTTCATTTCATGCTTTCAACACTTCACCTTGACTGCTTCTGTAATTAAGACTGAATTTTCAGCCAAACCTGTCAGAGAACACCACCGCCATAGCCCAATATGCAAATGCAACAATAGAGAATAACCACATGTTTTTGTTACTTAAGATTGCCGTGTGCCAGACATTCACTGGGGGTAAAGACACAAATAAAAAAAAATAAATACCGGAAAAACAACAAACAAAACAACTGGAGAATCTGAACACTTTGCACTGATACACATTTACAAAAATATTTCTGTAACTTTTTCCAAACCTTGGCATGGTTGTTTAGCATTCAAATTGTGGCTGCCAATTCAGAGTTCGATTGATCGGATTGAAACGTTTAGTCAGCGAGACAATTACAGATGCGAATTTTGGCGGAGTCCAAAATGACCTTAAACATTAAAAAGCTCACACTACCCCGAAAAATATAAATTTCACGCATACGGGTGACATTCAACATTCAAGTGCCAGTGTTTTTGTACTGTCTTTTGGTCAAGTTACTTGAAACTATCACTTTTAGGCTTATAAAAATAAATATTTCTCAAAAATGCTTAATAAATTACACAAACTAGCAGCAAAAGTAGAATCTAGTAATCTGTGCAAATAGCTAAATTCCCCACTGCTAATCCCCCTGGTCCCAAATCAGTCCTGGTTAACTATTGGAGAACCCTTCCCCTTTTGTAAACAAGCTGCGTTTTCACAATCTTCACACACAATATTTGGAAGCTTAAGGACACGCACTCAAGACATTTATATAAAACCCTAGATGTGCAATAAAACAACTTTTGTAAAACTTGATGGGCGTAACACAGAAGGGCCAAAAATAGCACCACTGCTATCAAGTTACCACAATACTGTCAATGCATCTGCTTCAGGTCACCTTTTTCAAATTCATGTCGAAAGGCACAACACGCTTGAGTAAATCTATTGCACTTCAGTTAAACGCATCCCACTCACCCTCATCAGACAGGCACGCCGCCGGCTCGCCCGCCGAGCGCAGCTGCAATAACGTGCGATAAAGGATGCATGGAAATTTGAAAGAAACCTGCCTTTGGCCAGGGATGCCACGGAAACCTCCACTACAAACCAACCAATAAGAGTCTGGTTCTACACTAAAACCACACCCCTGCAGCTCGTATGGTGCAGTTTCCCGTCGTGTACGCTGAATTCTACTGACCCCAGTAGTCCTCGCTAAAACCTGGGGGATACGAGGGAGCCGTGTAAAGCCGAGGATGTCTTTCGGAATTCAACGCAGCTTGAAAAAGAGAGAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAATGAACAAATGTTACTTGTAACGAACGTAAAAGCCTGCTGCAGAAATCGATTTGAAAATCTCCTTGACCAAAAAACAAGAACACTAGCATGCGGATTTCTTCAGAGACGAGCTGGGCTTTCAGGGCCAGTCCGCTCTGACATCGTGGTCCTAGAGTAGCCATTTGAACTTTCACTATGGAAGTTGCCACAAGCCTACCATTATCAACTTCAAGAATGGTTTTTGAAGGAAGAAAACAAAATTAATCCAATCGCTACCTCCATAATATTCNNNAAAAAAAAAAAAAAAAAAAAAAAAGGGGAAACAATTGTCAGCCAGACATTTAAAAAGGAAAAAAAACAAAACACAGCGATTATAAATTTAAAGGCACAGTACATTAACAAACAAATGATTCTCATTTAGTATAAAGAAATGAGATGTAGTGGAAAACTAGAGTCCAAGAATCTAAAGCAAACTTCTGCCTCCATTCCCCCCTTCAGTATGGTCGAGCACATCGCGAGACTGCTTCCTGCTACGGTCAAACCTTCAGTTGTCCTGGCATCCCCGCATCCCATGGAGTTAAAGCCTCTCCGGATGTGGTCAGAGAATCACAGCTGGTAATGTACTGCAAAGTTCTTCAAAGCTACACAGGGTATATAGTCTGGCTATGGTACATGTGGTTTCCATTCAGTGAGTTTGGCATGGTGATCCACTGTAATCGTGGGGAGTGGGTGGGGGGGTGAAGAGGTGAAGGAAGGAGTCTTAGTTTCCCCACCAGTCCACCTGGGAATAGTTTCCTCCATAGCCATCACTGCTGTAGAAGTTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570448 lncRNA downstream 16702 19429361 ~ 19431737 (-) True G497341
TU570482 lncRNA downstream 28400 19415453 ~ 19420039 (-) True G497375
TU570450 lncRNA downstream 85113 19306243 ~ 19363326 (-) True G497343
TU570554 lncRNA downstream 280064 19168075 ~ 19168375 (-) True G497444
TU570549 lncRNA downstream 281661 19160236 ~ 19166778 (-) False G497442
TU570458 lncRNA upstream 40639 19491924 ~ 19494481 (-) True G497351
TU570594 lncRNA upstream 52516 19503801 ~ 19550929 (-) True G497479
TU570595 lncRNA upstream 91522 19542807 ~ 19543826 (-) True G497480
CI01000340_19382181_19383365.mRNA mRNA downstream 64985 19381972 ~ 19383454 (-) True CI01000340_19382181_19383365
CI01000340_19346357_19355278.mRNA mRNA downstream 93161 19345904 ~ 19355278 (-) True CI01000340_19346357_19355278
CI01000340_19335733_19340791.mRNA mRNA downstream 107648 19335654 ~ 19340791 (-) True CI01000340_19335733_19340791
CI01000340_19326355_19328820.mRNA mRNA downstream 119118 19325634 ~ 19329321 (-) True CI01000340_19326355_19328820
CI01000340_19323506_19324456.mRNA mRNA downstream 123428 19323506 ~ 19325011 (-) True CI01000340_19323506_19324456
CI01000340_19456344_19458688.mRNA mRNA upstream 4746 19456031 ~ 19458688 (-) True CI01000340_19456344_19458688
CI01000340_19512374_19526344.mRNA mRNA upstream 59236 19510521 ~ 19526344 (-) True CI01000340_19512374_19526344
TU570552 other downstream 283967 19158869 ~ 19164472 (-) False G497442
TU570236 other downstream 993759 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 2205700 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 2402751 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2928465 16519911 ~ 16519974 (-) True G496628

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065271 True 18054 lncRNA 0.46 1 NC_007117.7 59835630 ~ 59853683 (-)
rainbow trout (Oncorhynchus mykiss) TU25441 True 204 lncRNA 0.44 1 NC_048565.1 22267762 ~ 22267965 (-)
striped catfish (Pangasianodon hypophthalmus) TU25441 True 3877 lncRNA 0.41 6 NC_047596.1 4122995 ~ 4127844 (-)
bowfin (Amia calva) TU90207 True 2894 lncRNA 0.38 2 CM030128.1 28240566 ~ 28297484 (+)
mexican tetra (Astyanax mexicanus) TU148244 False 2896 lncRNA 0.41 2 NC_035909.1 8611554 ~ 8640836 (+)