RNA id: TU570594


Basic Information

Item Value
RNA id TU570594
length 1046
lncRNA type read_through
GC content 0.41
exon number 2
gene id G497479
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19503801 ~ 19550929 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAACATCACTTGTGTTTTTATTCACGCATCACATTTCTTGGCATGTTAAATTACTGCAGGTAACTTGTTACAAAGGGAAAAAATAAGGTTGACATCATTCATGTTGTTTCAACATGACATTGATTAATTACAGCAGAATGTATGGCTAATCCAATCTGCAATAAACTTCTGCCAAGACCGTCCACAGGCAGATTCAAATTTGTGTCACTGCTAATGATTCACAGCGCGGTGGGAGAAGAATGAGGAAAACTGTTTCTGAACGAGCAAACAGACAGCTTTAATCTGCCCATCAGTCTAGAAATCTGAGCCTATGAGTGAATGTGCATTTTTACAGTAACGATTATGCCAAAAGTGAATTTTATACAACACTGTATGGTCAAACGAATGTGGACATGCCCTTCTAATTAATGGGTTTGGTAATTTTAGTCATTTCTGTGAGGACTAATATTAATGCTACACCATACAGTGAGATTCTAGAAAGTTGTTTTTAATTTTGTTGCAGCAGTTTTAGGAGGATCTTCTTCTGCTCCAGCATGACAGCGACCCTGTGCAGAAAGAGATGTCCACACAGATAAGCTTTACTGAGTGTGGAAGAATAATCAAAATGTTCAACAAGACACGAGAGCAGCAGTGCGTCAGACACATATGTTGGATGATGGAGGCTCTCGCAGTCGACATTCCAATTCAGGTGTTCAGTGGCGTTCAGGTCTGGCCTGCAGATCAGTCACATTAATCCCTACTACAGTCAATGAACTCTTTCTTTATGGTCCTTTCTTTGTGCACAGGGTCACCGTCATGCTGGAGCAGAAGAAGATCCTCCACAAACTCTGTAGCACAAATTTCTCAAGAATGTCACTGTATGGTATAGGATCAACATTTGCTGGTTCCAGCGTACTGGTGGCAGCAAGAAGTAACTGACAGATTGTGTTTCCGCACGAGTAATGTAGGCAACAGACTTGTATGCCTTTTTTTAGCAGGGAATCTGTACAACCACATTGAGCACTGGGACATTGCACATTCTCTCGTAGAGCCTCGTCAGGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570458 lncRNA downstream 9320 19491924 ~ 19494481 (-) True G497351
TU570457 lncRNA downstream 52516 19448439 ~ 19451285 (-) True G497350
TU570448 lncRNA downstream 72064 19429361 ~ 19431737 (-) True G497341
TU570482 lncRNA downstream 83762 19415453 ~ 19420039 (-) True G497375
TU570450 lncRNA downstream 140475 19306243 ~ 19363326 (-) True G497343
CI01000340_19456344_19458688.mRNA mRNA downstream 45113 19456031 ~ 19458688 (-) True CI01000340_19456344_19458688
CI01000340_19382181_19383365.mRNA mRNA downstream 120347 19381972 ~ 19383454 (-) True CI01000340_19382181_19383365
CI01000340_19346357_19355278.mRNA mRNA downstream 148523 19345904 ~ 19355278 (-) True CI01000340_19346357_19355278
CI01000340_19335733_19340791.mRNA mRNA downstream 163010 19335654 ~ 19340791 (-) True CI01000340_19335733_19340791
CI01000340_19326355_19328820.mRNA mRNA downstream 174480 19325634 ~ 19329321 (-) True CI01000340_19326355_19328820
TU570552 other downstream 339329 19158869 ~ 19164472 (-) False G497442
TU570236 other downstream 1049121 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 2261062 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 2458113 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2983827 16519911 ~ 16519974 (-) True G496628

Expression Profile