RNA id: TCONS_00022118


Basic Information

Item Value
RNA id TCONS_00022118
length 505
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id XLOC_010466
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10012985 ~ 10013605 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAGCTCACAACAGAGCCCAAATTTCTGTATTTGGAGCGGCTTCCAGATGCTCCAAATACAGATCAGGAGGGAGGTGGAGCAGAGGTGGAACAGGGGGAGGGAcagagggccaggaccatgcagcagAGGTGtacctggagcatggagctgtggAGGACCTGGAGCATGTTGCAGAAAGCATTGAGAAGTCACACGGCTCTGGCAGTCATTCGTGGGACTCAGGTGGTGGCTCTGGCCTTACGTGGGACTCGGGTGGTGGCTCTGGCCTTTCGTGGAATTCAAGAGGATCTGGCACCCCTGGCCATTCGAAGACTTCCAGAGGATCTGGTACCCCTGGCCATTTGGTGAATTCGCTGCTTGCAATGTCCTCATTGACAGCTGTCATGATTACTTGGGGACTGAAGAGAAAATGGAAAACATTGATAAGCAGAAGAAAGAAGTGGTTTGCATCTGTCAGAAATTGCTGCCAGAAAGTGGTGGCTGCCTTCCTGATATGACTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022117 lncRNA downstream 251232 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 446614 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020539 lncRNA downstream 570982 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 1333523 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00022115 lncRNA downstream 1447884 8551789 ~ 8565101 (-) True XLOC_010451
TCONS_00020554 lncRNA upstream 51321 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00020557 lncRNA upstream 191505 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00022119 lncRNA upstream 407565 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022120 lncRNA upstream 407565 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022121 lncRNA upstream 412142 10425747 ~ 10428540 (-) True XLOC_010473
TCONS_00020551 mRNA downstream 32583 9977858 ~ 9980402 (-) True XLOC_010465
TCONS_00020550 mRNA downstream 115216 9835192 ~ 9897769 (-) True XLOC_010464
TCONS_00020547 mRNA downstream 115372 9833256 ~ 9897613 (-) False XLOC_010464
TCONS_00020548 mRNA downstream 133578 9835011 ~ 9879407 (-) False XLOC_010464
TCONS_00020549 mRNA downstream 143929 9835084 ~ 9869056 (-) False XLOC_010464
TCONS_00020552 mRNA upstream 12291 10025896 ~ 10053049 (-) True XLOC_010467
TCONS_00020553 mRNA upstream 41887 10055492 ~ 10071886 (-) False XLOC_010468
TCONS_00020555 mRNA upstream 51907 10065512 ~ 10071887 (-) True XLOC_010468
TCONS_00020556 mRNA upstream 83517 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA upstream 199846 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020535 other downstream 710791 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1533976 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1617426 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1724538 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 2316769 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 241602 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 816204 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 902685 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1747314 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1998469 12012074 ~ 12012188 (-) True XLOC_010492