RNA id: TCONS_00020554


Basic Information

Item Value
RNA id TCONS_00020554
length 814
lncRNA type retained_intron
GC content 0.36
exon number 2
gene id XLOC_010468
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10055492 ~ 10071887 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGAGTCTGGGTCATTAGGGCCTGAGAATGGACCTGTGGTGGTCCACTGCAGTGCAGGAATAGGGCGATCTGGATCTTTCTCATTGGTTGACACCTGCCTTGTCTTGatGGACCAGAGAAATGACTTTTTGGCTGTGGACATACAAAAGGTTTTGTTAGACATGAGAGAGTATCGAATGGGCCTTATTCAAACCCCGGATCAACTTCGGTTTTCATATATGGCAGTCATGGAGGGAGCTAAGCTTATTCTGGGAGACTCTACTTTACAGGTATCAAACATATGCTGCATTTGCACTTATTAtcacgtttttacaaaaattaaaacaaattttaaagcaCTGAATTGCCTTAAAGCACTACAatgatatatgtatattttttattttaaatctaccATAGAATGTAAATATGGATATACTTAGGGATTGCCTAATAATAAGAGCTAGGGTGCGAGTGTTTTTTCACCCAGTCTAGTGTTTCACTCACAttcaatacacacacatttttaaacatcccAAAAACTCTAATGATAACTGAAAGTGTGCCACTGTTTTGGTTAGTAGCGCCtgccatttaagttaaaaattcAAGGTAAGTTAAATAATTTGACTGAATTATTttagaataatttatattaactacaataagaagaacaaaaaaaatgtagatgGCATGTTAAAGTGGTTTCAATTTTAATTATGATATCTTTATGCCACCACAGAGTTGGGAcacaattacacctgaaacacttcattatttggtgtcttcagtccctaaatgtcttttaagtgttgtgaaaaggaatggcaacat

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1196 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Orthologous to human PTPN2 (protein tyrosine phosphatase non-receptor type 2).

Ensembl:

ensembl_id ENSDART00000141111

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022118 lncRNA downstream 51321 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00022117 lncRNA downstream 303173 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 498555 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00020539 lncRNA downstream 622923 9441021 ~ 9442003 (-) False XLOC_010457
TCONS_00022116 lncRNA downstream 1385464 8668981 ~ 8679462 (-) True XLOC_010452
TCONS_00020557 lncRNA upstream 139230 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00022119 lncRNA upstream 355290 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00022120 lncRNA upstream 355290 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022121 lncRNA upstream 359867 10425747 ~ 10428540 (-) True XLOC_010473
TCONS_00022122 lncRNA upstream 783826 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00020552 mRNA downstream 11877 10025896 ~ 10053049 (-) True XLOC_010467
TCONS_00020551 mRNA downstream 84524 9977858 ~ 9980402 (-) True XLOC_010465
TCONS_00020550 mRNA downstream 167157 9835192 ~ 9897769 (-) True XLOC_010464
TCONS_00020547 mRNA downstream 167313 9833256 ~ 9897613 (-) False XLOC_010464
TCONS_00020556 mRNA upstream 31242 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA upstream 147571 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020560 mRNA upstream 221708 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020561 mRNA upstream 331560 10397440 ~ 10404383 (-) True XLOC_010471
TCONS_00020562 mRNA upstream 411653 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020535 other downstream 762732 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1585917 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 1669367 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 1776479 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020507 other downstream 2368710 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020559 other upstream 189327 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020565 other upstream 763929 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 850410 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1695039 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1946194 12012074 ~ 12012188 (-) True XLOC_010492

Expression Profile

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