Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020555 |
| length | 914 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 8 |
| gene id | XLOC_010468 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 10055492 ~ 10071887 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0016311 | dephosphorylation | biological_process |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016791 | phosphatase activity | molecular_function |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1196 | Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Orthologous to human PTPN2 (protein tyrosine phosphatase non-receptor type 2). |
| ensembl_id | ENSDART00000130382 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022118 | lncRNA | downstream | 51907 | 10012985 ~ 10013605 (-) | True | XLOC_010466 |
| TCONS_00022117 | lncRNA | downstream | 303759 | 9759176 ~ 9761753 (-) | True | XLOC_010461 |
| TCONS_00020541 | lncRNA | downstream | 499141 | 9564503 ~ 9566371 (-) | True | XLOC_010458 |
| TCONS_00020539 | lncRNA | downstream | 623509 | 9441021 ~ 9442003 (-) | False | XLOC_010457 |
| TCONS_00022116 | lncRNA | downstream | 1386050 | 8668981 ~ 8679462 (-) | True | XLOC_010452 |
| TCONS_00020557 | lncRNA | upstream | 133223 | 10205110 ~ 10207842 (-) | False | XLOC_010469 |
| TCONS_00022119 | lncRNA | upstream | 349283 | 10421170 ~ 10429820 (-) | False | XLOC_010472 |
| TCONS_00022120 | lncRNA | upstream | 349283 | 10421170 ~ 10429893 (-) | True | XLOC_010472 |
| TCONS_00022121 | lncRNA | upstream | 353860 | 10425747 ~ 10428540 (-) | True | XLOC_010473 |
| TCONS_00022122 | lncRNA | upstream | 777819 | 10849706 ~ 10859614 (-) | True | XLOC_010477 |
| TCONS_00020552 | mRNA | downstream | 12463 | 10025896 ~ 10053049 (-) | True | XLOC_010467 |
| TCONS_00020551 | mRNA | downstream | 85110 | 9977858 ~ 9980402 (-) | True | XLOC_010465 |
| TCONS_00020550 | mRNA | downstream | 167743 | 9835192 ~ 9897769 (-) | True | XLOC_010464 |
| TCONS_00020548 | mRNA | downstream | 186105 | 9835011 ~ 9879407 (-) | False | XLOC_010464 |
| TCONS_00020556 | mRNA | upstream | 25235 | 10097122 ~ 10261652 (-) | False | XLOC_010469 |
| TCONS_00020558 | mRNA | upstream | 141564 | 10213451 ~ 10223741 (-) | False | XLOC_010469 |
| TCONS_00020560 | mRNA | upstream | 215701 | 10287588 ~ 10316359 (-) | True | XLOC_010470 |
| TCONS_00020561 | mRNA | upstream | 325553 | 10397440 ~ 10404383 (-) | True | XLOC_010471 |
| TCONS_00020562 | mRNA | upstream | 405646 | 10477533 ~ 10516970 (-) | True | XLOC_010474 |
| TCONS_00020535 | other | downstream | 763318 | 9302079 ~ 9302194 (-) | True | XLOC_010455 |
| TCONS_00020526 | other | downstream | 1586503 | 8478880 ~ 8479009 (-) | True | XLOC_010450 |
| TCONS_00020525 | other | downstream | 1669953 | 8372265 ~ 8395559 (-) | True | XLOC_010449 |
| TCONS_00020521 | other | downstream | 1777065 | 8287771 ~ 8288447 (-) | True | XLOC_010447 |
| TCONS_00020507 | other | downstream | 2369296 | 7694794 ~ 7696216 (-) | True | XLOC_010438 |
| TCONS_00020559 | other | upstream | 183320 | 10255207 ~ 10261625 (-) | True | XLOC_010469 |
| TCONS_00020565 | other | upstream | 757922 | 10829809 ~ 10837232 (-) | False | XLOC_010476 |
| TCONS_00020567 | other | upstream | 844403 | 10916290 ~ 10916404 (-) | True | XLOC_010478 |
| TCONS_00020572 | other | upstream | 1689032 | 11760919 ~ 11779472 (-) | False | XLOC_010484 |
| TCONS_00020591 | other | upstream | 1940187 | 12012074 ~ 12012188 (-) | True | XLOC_010492 |
