RNA id: TCONS_00022119


Basic Information

Item Value
RNA id TCONS_00022119
length 1957
lncRNA type read_through
GC content 0.37
exon number 3
gene id XLOC_010472
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10421170 ~ 10429893 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAACCATCTGATGTAAACCATTGGAAATAAGCAGCTGAGGTGAAGTGCTGTGAAGACTGTGCTCTGGCAGTTGGTGTTAAACAGTGAAGCAAAAGGCCGTCCGGTCAGATGTCTGTGACATCTCTGCTCCAAACCCACATCAGAGAGTGCCTGTGGAGGCGAGCCCCTGAAAAAACAGTCATGACACTGAAGGAAGCCTGGATCGAGATCTGCGTGGGAACTTGCCCGGACTACACCACCATTAACCAGCACTGCAGAGATCAACAACACAGTGAGTCTGGAATGAGTCTGGGCACAATCTCACCTTCTTCATCCCTCCCCCTTTCACTCCCTTTCATCCATCCCTCCCTTTCCAAATCACTCTTGCTGACTACACCTCGGTTCAGTATTGCTATAATGCACACAAACCAGAACACACACCTCTCGCACGCCTTCATGACTACCTGTGTATCAGCATTCCCCAGCCTTCACAATAGCAAACttgctttttttttgcagctagtcattttttatctttgcttggctttttttccccaagtaataaaaaaaaaaaaatatttgagtttTTCCATAAATCGGAGATTATGCTTGACATCTGATGTACTTACTAAAAAGAAGACAGAAACACAGGggatatattttaaacatttaatataaaaaaacaataaacaacaaaaatgatcatgttttgCTTGTAGTTTTTCTCGGCACCTATGTGAAAGAAAAGGAAACAGAATTTAATAGCATTTCATAAGCAATTGTGTTATTATTAAACTGATACAGATACACTGTACTGTCTAATTCAGATTcaccaggtgtgtgtgtgcttaatgATCCCTCAGAAACTTGCCTGGACTAGTGTTGATGTGCTCCTGGGTAATATGGGTGTGGCTTTCtcaatctgtctgtttttcttcTTTGTTCTGCTCACTCAGTCTTTCTTAATGCTGTCGCACAACTCTATATTTAAAGTATGCTTGGGGAACATATTGCAGCTCTGCAGTCTTTAAAGAATGAGCCTATCCATTATCTACAGTGAGTCAGGTGTTTTTAGTAACTCAATATGTAATACAAACAAACGCCAATGCCAGCATAACAGCACAAGTGCAGATTTCTTCATGATGAGTCACTAAATCGTTTTTTACCTGGTTTATTTCCAATTTCCAACTAATAAAAGTGCTTGCATATCGCAAAGGATCTGAATGATCTAagaatatcatatttaaaaaggcCCAACAATAGCATGTTGGCAGGACAATAAGACAAAAATATCTAATTAAAGATAAAAAGTGTTATTGTCCTGCCATTTTAtgctaaaaatgttaaattattattattattattatcagaaaTTTATGTTATAGGTTCatgagtctctttttttaatcctacatttacattatataaaacGTTAATTTTCTTCAAATTTTTCTACTTTGATTTTTCCCCGTTCAAATACAATCATAATGCAACTACACACATACACCAACCGTacagtatttgtatttatatttcatGTTCTTGTTTGGTTGTTTCAAATGTCATATGCCATtaccatcacagaaataaattgaattataaaatatatttacattatttgaaacaaatttaggGCCCTAAtttaggcgcaaagtctaaagtgcatggcgcaaaagcattaagggcgtgtccgaatcctcttatgctattttaaagacagaaaaatacagtttgcTCCCTGTTGTAAGAtctaacagtgttgtgcttattctcttaagtTATGGgatgtgttttgagtataacatgcaataaaccaatcagagtctcatctcccataccctttaagagtcagttgcgccgcaccatggcacatttgctattcacatgtaagtggaaaaactgaacgctttactagtggaaaaaaacagttaaacagaccatctatgtgaggataaagaacgagcctcctccatttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020557 lncRNA downstream 213328 10205110 ~ 10207842 (-) False XLOC_010469
TCONS_00020554 lncRNA downstream 355290 10064926 ~ 10065880 (-) False XLOC_010468
TCONS_00022118 lncRNA downstream 407565 10012985 ~ 10013605 (-) True XLOC_010466
TCONS_00022117 lncRNA downstream 659417 9759176 ~ 9761753 (-) True XLOC_010461
TCONS_00020541 lncRNA downstream 854799 9564503 ~ 9566371 (-) True XLOC_010458
TCONS_00022122 lncRNA upstream 419886 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00022123 lncRNA upstream 487764 10917584 ~ 10919434 (-) True XLOC_010479
TCONS_00022124 lncRNA upstream 550232 10980052 ~ 11011652 (-) True XLOC_010480
TCONS_00021786 lncRNA upstream 805069 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00020570 lncRNA upstream 1008049 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00020561 mRNA downstream 16787 10397440 ~ 10404383 (-) True XLOC_010471
TCONS_00020560 mRNA downstream 104811 10287588 ~ 10316359 (-) True XLOC_010470
TCONS_00020556 mRNA downstream 159518 10097122 ~ 10261652 (-) False XLOC_010469
TCONS_00020558 mRNA downstream 197429 10213451 ~ 10223741 (-) False XLOC_010469
TCONS_00020555 mRNA downstream 349283 10065512 ~ 10071887 (-) True XLOC_010468
TCONS_00020562 mRNA upstream 47713 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020563 mRNA upstream 92776 10522596 ~ 10547781 (-) True XLOC_010475
TCONS_00020564 mRNA upstream 398967 10828787 ~ 10837245 (-) False XLOC_010476
TCONS_00020566 mRNA upstream 400852 10830672 ~ 10834756 (-) True XLOC_010476
TCONS_00020568 mRNA upstream 797426 11227246 ~ 11241424 (-) False XLOC_010481
TCONS_00020559 other downstream 159545 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 1118976 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 1942161 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020525 other downstream 2025611 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020521 other downstream 2132723 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020565 other upstream 399989 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020567 other upstream 486470 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020572 other upstream 1331099 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 1582254 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 1809587 12239407 ~ 12239460 (-) True XLOC_010497

Expression Profile

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