RNA id: TCONS_00020568


Basic Information

Item Value
RNA id TCONS_00020568
length 4627
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_010481
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11227246 ~ 11241424 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAAAGCAATAATCCAGTCAAATGAACGTCAAACTTGGCTGCAGATGAATGGTCGTATGATATTTATTGATGATTAAATTGCCAAAACTGTAAACAAGCACTCTAGCATCCGAAACACCAGTCTCCATCTCGACTGCCTGAGTTTGACAGACAGTTTTCTGTCCAATCACCGCCTGGCTCGAGCCGCACGCGAACCCCCATGGGGCGGGGCTACTAACACAGAGCAAGGAACAGAGGCCAGACAAACGGCACATTTCCACATCCACGATCGTGTTTACGCCAAAATACTCAACAAACAGTGCGTCGCGCTACACAATACCGGTCCGTTGCGGTTAGAAACGCGTTGTGAACACGGGAAAGCTTCAGCGGGACCGACGAGCGCTGCACGAGGGATTGCCCAACTGCAGCGCGCGCGGTGAAGCTCGGAAACGGTTGAGGAAAGAAGGCCTCCTTTCAGCGCTCTTAGACCTGCGGGGAAAAGTGAAGAGCGCCGCCTGACGACCGCCATACAGCGGGGTGGCTTTCGCAGGAGACCGCGGTGCGCTCCACAAGCTCTGGCAAAATCCGAAGAGCGCCGCCAACTGCTCGCCACAAGgtCAATTGGTAGCTTGTGATCGATATCTGGCCGGGTATTGCACACTGAAGGAGTTGACTGAGACTCACTTTGACCCAAGCACTTCATCCGCTTTTCAGCACAAGGACAGTCTTTGCATCTTAAACACTTTGAGTAAAAACAAACTCTGCCATCACCATGAGTGAGCAGGAGTTTGTGGAGCATCAGTACATGTGCAGTGAGTGCCAGCAGCTCTTTAACACCCTCGAGGACGTGCTGGTGCACCAGCAGATCCACACTGGCGCGGAGGAGGTAGAGGTCCTGCCGAGCCTGGAGGACTGTGACCCGACGGAGAGCCAATATCAGTGCCTGGAGTGTGGAGCCATCCTGAGGAACCCAGATGAACTGCTGCTGCATCAGGAGCTGCACATGAGAGAGGCGGGCCAGGAGCTATGCGAGGTCACAGAAGTGGACGCTGTTGATGCAGAAGTGCCAATCCAGTATCAGTGTCTGGAATGCCTGGCTCTTTTTGACACACCTGAACTATGGCtggcacacagacagacacacagcagAAGCAGCACTCATAGTAGCCTGAGCGCCGGCACAgAATATGTCCTTCAGCCTGATGGTTCAGTCACTCCCATTCAGTTGCTCAACGTTCAAAATCTAGTTCTGGATGAACAAAGGGCAGGCCAGATCCTGACCCTAGCCCAGGCACTCCGAGAACAAGAAACCCCATCCAAGGCTGCAGCCCCTCCCAGAACTATGCTAGTACCAGCAAACACTTCCCTGCCTGGCTCCACCTCTGCAATGCTCCGCCTGCAGTTCTGCTCTGCCCAAGCGATTGCTGATGGTTCTGCCCCATCTACTCTCCGCAAAGCAAAACTTCTTAGCCCCCTCTTACCTGCTGAGCCCATCCGGTTGGACAACGTGACCACTTTAAATCTTCTCCCTTCCTCTGGTCAGGTGAATGCAGTTAAGAAGGAAAATGAGGAAATTTTAATCATCCACCCTTACGAGTGTTCCGAGTGTAATCTGCTGTTCAGTACACCAGAGGATTTCCTCCAACACCAGGGGGAACACTTCTTAGGCCAGGACAAAGAGACTGGGGACACTGGGGTGATGGTGGGGTATGAAGACAGTTTGGGAGCAAAGGATGATGAAGGAAGAAGTGATGGATCAGAAGAAGGCAAAGTTGGCAGAGTTAGTGGTGGGAGGCGCATGTACACCGCCCGCTCAGCTGGTTTGGGTTTGACATCACCTGTCTCACCAAGCAGTCTTCGGTGTGAAGAGTGCAATAGAACATTCACCTCTGCCAATCGGCTTGTTGCACACCTTCGTGTGCATGAACAAGGAACCCATGAGTGTCCAGAGTGTGACAAAGTGTTTAAGAAGTTAGTGTCCCTTCAGACGCACATGCGCACACACTCAGGTGAGGCACGTTTTCTCTGTGTGGACTGCGGACATGGATTTACCACTGAAATGACTCTCATGATACACAGGAAATCCCACACATCTGAGCCACTGCACAAATGCCCATTTTGTGCTAAAACTTTCACCAACATGACAAAGTTCTTGTACCACCGCCGCACTCACAGAGTACGCGAGCCAACCACTCCAGTCTCTCAGTTTGTACTGGCACAGCAGTCACCCGTCTCTATCATCCAAAGAGCAAGAGAACGAGAGGCTGCTTGGAGAAAAGACAGACAGGTGCTGACAATTCCTTCTAAGGATGAGTCCAGTGATGCAGGTCCAGTGCTCATTGAAGGTATTACTGTGGTCTCCCAGTCTACAGAACCAACAGAAAATGGGCTTTATGTTGAACCCTCAAACACAGAACAAACTCAAAATGGAGGGAAAAGGCTGGCAGATGACCCCAATTATTTAACGATTGCCAAAAGTGAAGGAGGTGGAGTCGAAGATAAACGCATGGTTCCGGCTGCTGAGGAAGATCCAAAGTTCCCTTGCTCTATTTGTGGAAAAAGATTCTCCTCGCAGGTCCGTTTGTTGCGCCATCGACGTACGACTCATACGACTGAAAGGCGCTTCAAATGCAACATCTGTGGGAAACCATTCAAGAAGCAAATCCATCTGCGGAAccacctgcgcacacacacaggggaACGACCGTTCCAGTGCAGCGTGTGTGGAAAGACCTTTTCCTCTCTTGCTAATCTTTCCCGTCATGGACTCACACACACAGGAGTCCGTCCGTACCGCTGTGACATTTGCCACAAAGCCTTCAGCCAATCCTCAAATCTACGTCAGCACCGTCAACATCTTCACAGCAATGTGACACCCTCATCGTGTCCAGACTGCTCTGCGACTTTTATCCGTCCTGCTAAACTCGTAGCTCATCGATTCCTTCATCATCCAGGGTCACCGGCCCCTTACCCCTGTCCACACTGTACAGAGGGGTTCCTGCGCAAACGTCAGCGAGACGTACATTGTCTGGAGGAGCATCCCTGCTTGGCACAACCCCACAGCATTTCTCAGGAGTCTCAAGGCAGGGGTCAGGAAGGTTCGGCCGATGATACTGAGCAGCAAAGTGCTTCTTCAATACCAAAACCCAACCTAGATTGCACTATTTGTGGTAAGCGCTTGAACTCTCCTGCGAATCTTCGCCTACACCAACTGAGTCATGGTCTCGGGCCTGGCCGGCCACGAGGCTCCAGCTCTAACACTGGGAAGTCTCATCCCTGTCCAGTCTGCGGAAAACTGTTCGTTTCTGCCTCAAGTGTTACCCTACACCAGAGAGTTCACACCGGTGAGCGTCCGTATCCTTGTGCAATCTGTGGAAAACGGTTTCGCCAGAACACGCACCTGCGGGAACACCTTCGCACACATTCAGGCGAGCGTCCGTTCCGATGTGAGTTCTGCGATAAGGGCTTTGTTCAAAGCATGCATCTGGCAGAACACCGGCGAACGCATACGGGTGAGCGGCCGCATGCTTGTGGTGAATGTGGAAAGACCTTCAAGACTATCTCAAACCTTAGGACCCATCGTAAAACCCACTCTCGCTCTCAAAAGCAACAAGAGTCGGAACACAGTGGAGAATTGTCAgccacaggaacaaacacagtAGCTGTTGCTGTTTTGGAGGCTTCAGAGATGGACCTGGCAAACTCTGTACCAGACTTCGGCCAACAGGGGGTCCAGCTTGGACAGCCACAAGTCATTCAGATACAGACATCTAACCTGACACAGACTCCGGGCACTCCTACCATCATGTGTAATGAGTTTGGAGAGACTATAGCCATCATTGAGACAAGTGGAGATCTAACAGAGGCCATCGAGCTCTACCGCACAGCACTGGAGGGCGGTATCAACATGGAGGCCATCACTGTGGACAACCTGCAGTTAATGTGAAGCATTGACAGTGCAGCATTCCAAGCAGGAGATTCGAAGATCACAGTTATACGCTGAGAGAAAAAGATGTCAGATGCTTTGGAAGAAGTGTAGAGAGACATTCAAAAATAAAAGCAGAGAATGAATTCGAGCTTCTGAGATCTTGAGTTTTGCAAATGCAAGGAATCGTATTAAGTTCTTGAATGTGTCAACAAGTGTACCTCAGAGAGCCACTCTTGTCCTTCCTTTCAAATGCTTTTTCAGCCATTTTTTGCAAAATAACATTGACTGACTTCAAAGAGGGCTGATTTTTGAAGACGCAACTGACAGACTTAAGATGGCTCCTTAATTGGGGCTAGAAATGGGTTGTTGCCAACGACACACTGAATGACTTATTCTTACATTTGGAGGCCAGCAAGGTACAGGTTACATAAGTAAAGAGTTTGGACAGTGAAGCAAGTTGTAATGACTCTCCGTTTACATTTTGATCTGCAGTTCTTTAAAGGCGGTAGTTTAAGGGCATTGAGCTGTAGAACAGAACAGGGAAGGAGGAGATATAGACATGCTTATTACAGAAGACAAAATATGCACCATCACTTACCATGGAGTAAGAATCCTCCTGTTACATGTACCACATCTCGGCCTGCACATTGTATGTTTgtagcatttttttattgttatgctCATTTGGAGAAGTGTTGGAAATAAACTGTTTGTCTCT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-260 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF526 (zinc finger protein 526) and ZNF574 (zinc finger protein 574).

Ensembl:

ensembl_id ENSDART00000134752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022124 lncRNA downstream 215594 10980052 ~ 11011652 (-) True XLOC_010480
TCONS_00022123 lncRNA downstream 307812 10917584 ~ 10919434 (-) True XLOC_010479
TCONS_00022122 lncRNA downstream 367632 10849706 ~ 10859614 (-) True XLOC_010477
TCONS_00022120 lncRNA downstream 797353 10421170 ~ 10429893 (-) True XLOC_010472
TCONS_00022119 lncRNA downstream 797426 10421170 ~ 10429820 (-) False XLOC_010472
TCONS_00020570 lncRNA upstream 196445 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00022125 lncRNA upstream 289461 11530885 ~ 11538821 (-) True XLOC_010482
TCONS_00022126 lncRNA upstream 355960 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00020576 lncRNA upstream 533717 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022127 lncRNA upstream 719206 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00020564 mRNA downstream 390001 10828787 ~ 10837245 (-) False XLOC_010476
TCONS_00020566 mRNA downstream 392490 10830672 ~ 10834756 (-) True XLOC_010476
TCONS_00020563 mRNA downstream 679465 10522596 ~ 10547781 (-) True XLOC_010475
TCONS_00020562 mRNA downstream 710276 10477533 ~ 10516970 (-) True XLOC_010474
TCONS_00020561 mRNA downstream 822863 10397440 ~ 10404383 (-) True XLOC_010471
TCONS_00020571 mRNA upstream 519178 11760602 ~ 11766265 (-) False XLOC_010484
TCONS_00020573 mRNA upstream 531971 11773395 ~ 11778933 (-) False XLOC_010484
TCONS_00020574 mRNA upstream 532422 11773846 ~ 11779661 (-) False XLOC_010484
TCONS_00020575 mRNA upstream 532430 11773854 ~ 11779514 (-) False XLOC_010484
TCONS_00020577 mRNA upstream 536847 11778271 ~ 11779508 (-) True XLOC_010484
TCONS_00020567 other downstream 310842 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 390014 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 965621 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 1925052 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 2748237 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020572 other upstream 519495 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020591 other upstream 770650 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 997983 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 1006438 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 1008844 12250268 ~ 12250323 (-) True XLOC_010499

Expression Profile

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