RNA id: TCONS_00020571


Basic Information

Item Value
RNA id TCONS_00020571
length 613
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_010484
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11760602 ~ 11779661 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCTGAACACTGAAGACTTAAAAGTCGACTTTTAGACAGTTTGTCTCATTTTGATTCTGATTGCCGATGAAAACCATGAACTTCCAGATACTTGTGCTGGCTTTTGCTGTGATGATTGTCACTAACATCCAGTGTGAAGCACGACCTCAAGAGGGAAAGTCAGACAAATCTGCAGAGGTCAAAGGCCATGCTATGCCTAGGAAATGCAACTGCCAAGTGAGGGGAACTGCTCTGGATCGGAACTGTGTCTGTGAGATGCCACATAAATCTAGACCAACCCTCAGCCCAGAGCAGAAAAACATGTGCTTAAAGAAGAGGATTAAGACATTTAGAAAATGCCTGCAGTTGATTGGTGCAAACAAGAAGATCGCCAAAGGAGCCAGTTTGCCAATATAAGACCTTCTGGCATTCACTGGCACACAGAAAGCTATGTATCTTTTACACAATACCTATAGCAGTGCATACTGAAGTCGTGTATACTCAACTATTTTTGTATCTGTATTATTATGTAACATTTATTCAGTCCAGTTTTCTAACTTcagattttaaaaagttatatattGGATAAAGAcgtttaaatgaattaaaaataaaacatgctgGTAAAAAAGA

Function

GO:

id name namespace
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-10 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be part of nucleosome.

Ensembl:

ensembl_id ENSDART00000141547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022126 lncRNA downstream 121130 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00022125 lncRNA downstream 221781 11530885 ~ 11538821 (-) True XLOC_010482
TCONS_00020570 lncRNA downstream 222234 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00021786 lncRNA downstream 519382 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00022124 lncRNA downstream 748950 10980052 ~ 11011652 (-) True XLOC_010480
TCONS_00020576 lncRNA upstream 8876 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022127 lncRNA upstream 194365 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00022128 lncRNA upstream 195420 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022129 lncRNA upstream 226301 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00020593 lncRNA upstream 286041 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00020568 mRNA downstream 519178 11227246 ~ 11241424 (-) False XLOC_010481
TCONS_00020569 mRNA downstream 525030 11227946 ~ 11235572 (-) False XLOC_010481
TCONS_00020564 mRNA downstream 923357 10828787 ~ 10837245 (-) False XLOC_010476
TCONS_00020566 mRNA downstream 925846 10830672 ~ 10834756 (-) True XLOC_010476
TCONS_00020563 mRNA downstream 1212821 10522596 ~ 10547781 (-) True XLOC_010475
TCONS_00020573 mRNA upstream 7130 11773395 ~ 11778933 (-) False XLOC_010484
TCONS_00020574 mRNA upstream 7581 11773846 ~ 11779661 (-) False XLOC_010484
TCONS_00020575 mRNA upstream 7589 11773854 ~ 11779514 (-) False XLOC_010484
TCONS_00020577 mRNA upstream 12006 11778271 ~ 11779508 (-) True XLOC_010484
TCONS_00020578 mRNA upstream 19702 11785967 ~ 11788044 (-) False XLOC_010485
TCONS_00020567 other downstream 844198 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 923370 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1498977 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 2458408 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020526 other downstream 3281593 8478880 ~ 8479009 (-) True XLOC_010450
TCONS_00020591 other upstream 245809 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 473142 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 481597 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 484003 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 487150 12253415 ~ 12253471 (-) True XLOC_010500

Expression Profile

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