RNA id: TCONS_00020580


Basic Information

Item Value
RNA id TCONS_00020580
length 743
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_010486
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11790640 ~ 11798994 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGAACATCATTCCCTGGAGGAGGTGAGACGATATTAGGAAGACTCTACATTGAAACAGGTTTCTGTTGTCAGTGATGTCATATCAGGCAGAATCAATGACGTCTCAGCCTCAAATGACTGTAACCAGTTACACAGTTTCTCACTGGAGCTCTGACGTCTGTGACTGCTGTGATGACTGCGGCATCTGTCTGTGTGGGGCATTTATTCCTTGCATCTTGGGTTGTAAGGTGGCACAGGATAATGGCGACAGCTGCTGTCTGCCCTTCCTACCTGGAGCTATGGTTGCACTGAGGACCAGCATCCGTGACCGATATCATATTAATGGATCTGTCTGTGATGACTGGGTGATCATGACCTGCTGCTCTTTCTGTGGACTCTGTCAGCTGGCCCGAGAACAGAAGGCGAGAGGCTAATTTGGAAACGAAGGgaatggaataaatgattaaaaaaaaaactaaattgatgGAACTGAAttttttaatatgatttgctttttttccccaaactgtcTCAAAGTTTTAAATGACCCTTCAACTATGAAGTGTTAGATTTGATTTCATTGAACCttgcattatattttatacaacaaACCAAACCCTTATTAACTTTTTACATCAATCAGTCTACCTAAATTTAGggcaatattattataaaaaaaatctgataattaTCAgtatacaaatatgtatttacagaaagatttctctgcatgacaaataaaaacaacaagacTAGGCAAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0001533 cornified envelope cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-110 Predicted to be active in cornified envelope. Is expressed in several structures, including alar plate midbrain region; gut; hatching gland; musculature system; and optic vesicle. Orthologous to human CNFN (cornifelin).

Ensembl:

ensembl_id ENSDART00000135408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020576 lncRNA downstream 11196 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022126 lncRNA downstream 151168 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00022125 lncRNA downstream 251819 11530885 ~ 11538821 (-) True XLOC_010482
TCONS_00020570 lncRNA downstream 252272 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00021786 lncRNA downstream 549420 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00022127 lncRNA upstream 161636 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00022128 lncRNA upstream 162691 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022129 lncRNA upstream 193572 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00020593 lncRNA upstream 253312 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00020617 lncRNA upstream 679703 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020579 mRNA downstream 1532 11786054 ~ 11789108 (-) True XLOC_010485
TCONS_00020578 mRNA downstream 2596 11785967 ~ 11788044 (-) False XLOC_010485
TCONS_00020574 mRNA downstream 10979 11773846 ~ 11779661 (-) False XLOC_010484
TCONS_00020575 mRNA downstream 11126 11773854 ~ 11779514 (-) False XLOC_010484
TCONS_00020577 mRNA downstream 11132 11778271 ~ 11779508 (-) True XLOC_010484
TCONS_00020581 mRNA upstream 54218 11853212 ~ 11858009 (-) False XLOC_010487
TCONS_00020582 mRNA upstream 54463 11853457 ~ 11859309 (-) True XLOC_010487
TCONS_00020583 mRNA upstream 112903 11911897 ~ 11946139 (-) False XLOC_010488
TCONS_00020584 mRNA upstream 112909 11911903 ~ 11932923 (-) False XLOC_010488
TCONS_00020585 mRNA upstream 112912 11911906 ~ 11928774 (-) True XLOC_010488
TCONS_00020572 other downstream 11168 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 874236 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 953408 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1529015 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 2488446 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020591 other upstream 213080 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 440413 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 448868 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 451274 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 454421 12253415 ~ 12253471 (-) True XLOC_010500

Expression Profile

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