RNA id: TCONS_00020581


Basic Information

Item Value
RNA id TCONS_00020581
length 2821
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_010487
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11853212 ~ 11859309 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATGAATGTTGACTCAAAAACAACATTCAGTATGAAGGATTTCAGTGACTACACAGACCTTTACAATTACAGTGACTACAATGACAATGAAAGCTATGGCGCAGGAGCTGTGTGCACTCAAGACTCCAGCATGTACTTTGACAGCATTTTTAAGCCAATCCTTTACTCACTGGCAGCGGTCGTGGGGCTGCTGGGAAACGGCTTGGTTCTGATTGTACTGTGGAAGAAGAGAGCAGGTTTGAATGTTACAGACATCTTCATCCTCCACCTGAGCCTGGCAGATATTTTGCTGCTGTTAACACTGCCCTTCTGGGCTGTAGAGGCGGTGAAGGAGTGGATCTTTGGCACACCACTTTGCAAACTGACTGGAGCTATGTTCAGGATCAATTTCTACTGTGGCATTTACATGCTTTCCTGCATCAGTCTCGACCGCTACCTGTCCATCGTCCATGCAGTCCAAATGTACTCCCGTAAAAAGCCCATGGCGGTTCACTGTTGCTGCATGATAGTCTGGTTCTTCTGCTTTCTGCTCTCCATTCCCGATTGGATATTACTTGGTGCCAACAAGGACTCCAGACGTCAGGATAGAACAGAATGTGTTAATTCAGAAGCTCTATCTGATTTTTGGGTTCTGGTCAATCGTCTGATCTATCATTTTTTGGgtttcattattccagcaataatgATGGTCTTCTGCTACACTAGCATTCTGCTGCGCTTACTGCTCGGCTCCAAGTGCATGCAGAAGAAGAGGGCCATCCATGTCATTGTAGCCCTGGTACTGGCCTTCTTCATCAGCTGGACGCCCTACAACATCGCCCTCATGGCTGACACCATACATACCAACAGGACTGACAATAACCAAACGTCCTGCGAGACCAGAACCACGTTGGATGTTGCGATCACAGCCACTTCAACATTTGCCTACATGCACTGCTGTGTCAACCCAATTCTTTATGCTTTTGTGGGGGTGAAATTTCGTCAGCACCTGCTAGACATGCTACGACCTCTGGGCTTCAAGCTGAAGGGCCGCGCAGGCCTGGTTTCTCGGAAGAGCTCGGGATGGTCAGAGTCGGTGGACACTTCCCACACATCTGCTTTCTGAAGCATCAAATGCCATCAGACCATTACAGTATCTTTTCCTGTAATTGTTAACAAACATTGTTGTATTATGCAAGAGGAATCAAGAACTCAGGCGTTGTCGTTCACACCAATGACAATGACTAACAAaaggaaaaaagtcagaaaaaagTATTAGAGCTAATGGCATAAGTACCCTAATTTTGATGTGTTTACCCAGCAGGAATTGGGAATGATTTTAGTTATAGAAATCACCATTGAGGGAACTAAAAAATCACCTACTTCAAAAAATCCAGGTCTAATCCAGCTCAACTGGAACTACAACTGACATTAGTGTACACAGATTGGGTAAATGGCATGTCATAcaaaatacacagtattttaaagtgttacaagaCACATACTTGGTCTCGATGATACAGTATGTACCATTTCAAGTTGTCATATTTTGTCTCTCATTCTAATTTAGTTCTTTCAGTCACATATCTTATACGAGTATGTTCCATTTCTATTATTATGACATACACAAAATTCAAATAGAGTCCTTTGTGATTAAAAAACGACCCTAATAATTACAATTAGGACAACGGTCTAAGATGAAAATGTAGTTATTAGAgactttatctttttttttcgtCACACTCATGTGATCGAAGTGTTGTGAATGTTTTGTTGAGGTGTTTTTGGttaaaatgtgtgtaatattGATCATTTTGAAATTTTCGCTATAGAGAAAAAATGTAGACATGTTTAGATAGACGATCTATCTATTTCACTCTAAGACTCCAAACACAGCTGTCCTCTGACAACAGAGGAATAAAATCAATGGCTAAAACAATCATACAACATCGTCAACTTCTGTTTTGGAGGTTAATGTTACTTTAGTTTTAATAAACATCGTTATTATACGTGGTTTGAGCCAGTTTTTAATGTCGAGACTGTGCTGATTAATACGcagaatgttttaaaacatgaatttaGATGTTTAAGCTCTTCACATGTGGCAGCTACCATAGGTTTTCAACTGTTTAGCTTTCTCAAGCATATTGATTGCCTGCGACTTTGGACAGAGATCAAAGTTATATTACGTTAAAATAGATCACTTTCAATTACTCAACTGGATAATGATTTTGAAAAATTGTGGGAAGCtgaagtttatatatttttaatatttacttttttatatatattttttacttttttatattattcattatgcTTTGGagttttttatgtattgtttagTAATGCTTTCttgatatttactgtatgatgttCTATTTTTTCGGTATCTTTCTTTGctgtacatacattttaaaaaatcttttacataataatatgaaataGTACCGCCAGATATACATATTGGTTTTTAATATCTGTTTTTACTTTGATAtataacattttcatttgtgcTTGCATTAATCTTGTATCTATGAGGTCTGTCTCATTAATGCTGTAAAACTGCAGTACAATAAAACAGAAGCAAAATGGCTACagtttatgattatttattttactttcgaGTTCACCTTTGTTGAGTCCAAGTCCACAATGTGATATACATAGGAAAAAGGTAAATGAAAATACAACtggatttcttttttattgaatttaaaatcAAAACTGAACCATTATATTGGTTCTTGTTTATAAACCAATGGCATAACAAAAAGCTTAATGCTttgttattttaatgcattattccTACTAAAATACAAGGCAAATGGACAGTGGCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0002685 regulation of leukocyte migration biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0016494 C-X-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-38 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within several processes, including G protein-coupled receptor signaling pathway; angiogenesis; and regulation of leukocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in asthma. Orthologous to human CXCR3 (C-X-C motif chemokine receptor 3).

Ensembl:

ensembl_id ENSDART00000158347

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020576 lncRNA downstream 73768 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022126 lncRNA downstream 213740 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00022125 lncRNA downstream 314391 11530885 ~ 11538821 (-) True XLOC_010482
TCONS_00020570 lncRNA downstream 314844 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00021786 lncRNA downstream 611992 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00022127 lncRNA upstream 102621 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00022128 lncRNA upstream 103676 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022129 lncRNA upstream 134557 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00020593 lncRNA upstream 194297 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00020617 lncRNA upstream 620688 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020580 mRNA downstream 54218 11790640 ~ 11798994 (-) True XLOC_010486
TCONS_00020579 mRNA downstream 64104 11786054 ~ 11789108 (-) True XLOC_010485
TCONS_00020578 mRNA downstream 65168 11785967 ~ 11788044 (-) False XLOC_010485
TCONS_00020574 mRNA downstream 73551 11773846 ~ 11779661 (-) False XLOC_010484
TCONS_00020583 mRNA upstream 53888 11911897 ~ 11946139 (-) False XLOC_010488
TCONS_00020584 mRNA upstream 53894 11911903 ~ 11932923 (-) False XLOC_010488
TCONS_00020585 mRNA upstream 53897 11911906 ~ 11928774 (-) True XLOC_010488
TCONS_00020586 mRNA upstream 102408 11960417 ~ 11961325 (-) False XLOC_010489
TCONS_00020587 mRNA upstream 102579 11960588 ~ 11963804 (-) False XLOC_010489
TCONS_00020572 other downstream 73740 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 936808 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 1015980 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1591587 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 2551018 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020591 other upstream 154065 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 381398 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 389853 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 392259 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 395406 12253415 ~ 12253471 (-) True XLOC_010500

Expression Profile

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