RNA id: TCONS_00020593


Basic Information

Item Value
RNA id TCONS_00020593
length 628
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_010493
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12052010 ~ 12060782 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCCCCAGTCAGGCCATTTTCAAGCCCCAGTGGTTGGGTGTGGGCTTTGGGGCCTCTGGTGTCCGAGCGAGAGGGGTTCAGAGCCGGGGGAAGACGGCAGTGTCCTCACCACGCAACATCAAAAACACTGCTACTAATGAGAATAATAACATGGTTGTGCGCACCAAACAGAAGCCGAGAGAAAAAGTGCTGATTGGCGAGGGCAGATCTCCTCTGCAGATCCTGAGGGAGACCAATTCACCCAGAGAACGCAACTCGCAGGTACTTACTAGCTGCAAACACACAGACCTTGGTTATCATTTTACTGTCATCTTTCATGCTCTGTAATGACCAACATCTAAATGAATGTTGGTGTCTCTCTTCAGATGAAATTGAAAGTGTCGACTCCAGAAAGACAGAGGTTCAGCCAGATGGACAGAAGAGCTCTGATTATGTCCCTCGACAAAGAGAACGAGTGAGAGCAGATCCACACACCAGCACAAACCTCAGACAACACTATGTGTATAAACCATTTGAAACCTGCAACTACATGATTCTTCTTTTTCCTGCTTTTTACTTTTTGTTCcttttgtgtgtttgtaaataaacactcttttaatgtaaataaaattaactttggATTTATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000123643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022129 lncRNA downstream 47222 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00022128 lncRNA downstream 89227 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022127 lncRNA downstream 90813 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00020576 lncRNA downstream 272862 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022126 lncRNA downstream 412834 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00020617 lncRNA upstream 424463 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020619 lncRNA upstream 450695 12504929 ~ 12512576 (-) False XLOC_010506
TCONS_00020621 lncRNA upstream 456952 12511186 ~ 12512593 (-) True XLOC_010506
TCONS_00020622 lncRNA upstream 470498 12524732 ~ 12532027 (-) True XLOC_010507
TCONS_00021787 lncRNA upstream 508996 12563230 ~ 12566004 (-) True XLOC_010508
TCONS_00020590 mRNA downstream 65985 11965371 ~ 11986321 (-) False XLOC_010490
TCONS_00020589 mRNA downstream 65985 11965371 ~ 11986321 (-) True XLOC_010490
TCONS_00020587 mRNA downstream 88502 11960588 ~ 11963804 (-) False XLOC_010489
TCONS_00020588 mRNA downstream 89347 11961685 ~ 11962959 (-) False XLOC_010489
TCONS_00020586 mRNA downstream 90981 11960417 ~ 11961325 (-) False XLOC_010489
TCONS_00020596 mRNA upstream 10342 12064576 ~ 12097394 (-) False XLOC_010494
TCONS_00020597 mRNA upstream 10984 12065218 ~ 12095144 (-) False XLOC_010494
TCONS_00020598 mRNA upstream 10984 12065218 ~ 12097558 (-) True XLOC_010494
TCONS_00020599 mRNA upstream 48102 12102336 ~ 12173554 (-) False XLOC_010495
TCONS_00020600 mRNA upstream 51898 12106132 ~ 12173647 (-) False XLOC_010495
TCONS_00020591 other downstream 40118 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020572 other downstream 272834 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 1135902 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 1215074 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1790681 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020603 other upstream 185173 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 193628 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 196034 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 199181 12253415 ~ 12253471 (-) True XLOC_010500
TCONS_00020613 other upstream 420627 12474861 ~ 12494417 (-) False XLOC_010505

Expression Profile

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