RNA id: CI01000350_00048651_00049682.mRNA


Basic Information

Item Value
RNA id CI01000350_00048651_00049682.mRNA
length 2024
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000350_00048651_00049682
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 48443 ~ 50466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAGTGTTGCTTCTGTTAGATGATAAACACATTGAAATAAAAGCTCAGGATTATATCACCGGTTAGCTTTCATTTTTCCTTCTTTCATATATGAAGCTGTTTTGTAATCAGTGAACTCAATCTGTAGAAGGACTAAAATAACATCATTCATTGGGTGTGGAGATTGAATGTTTATTTTATTCTGTGTTGCAGGTTCAGGCACGATGAACGGCATTATTCCCAAGAGCAAAACAAAAGGCACTGACTTCTGTGCAACTGGTGACTGGCATTATTATATAATCCGCTCTGATCTTGGCTGCTATATGAAGACAAGAAATTTACAACAAGGTTTAGACATCTCTATTTTCAGTCTGCACCCTTCCTGCCAAAATGGAGACCATTACCTTGGTAGTGATTCTGACTACTTTTACATCATCAAGGGCAATGAGTACCGCAAAGTCAACAACCTGACGACAGACAGCAATGCTAAAGTTTACACCCTTCATCCCAACTGCCGGGGTGGAGACTACTACTTCTCAGCCTCTGGCTATTTTTACATTATCTTCCAAAAAAAGGGCACTTATCGAAGAACAACAGACATGACAAATGACTCAGAGAGTGTAGAATGCAACCTGCATCCCACCTGCAGAAACGGTCTCTATTACTGGGGCGTAAAAGGCGAAATCTCCTTCCTCAAGCCAGGCTCAAAGTGGGGAGTTGAGTTCTACACCGGTACCGACCTCAGCAAAGATAACCCCATTGGTGTCTATTCTGTTCATCCTGATGTTCTTAACTTCCTCCCTGGTGGGCTGTCAGTAACTATAGGCCCATCCTTTGGCATCTGGGAGAATATTAAAACTATATTTAATGACAGAAAATCACCAGTTACATGGACAAAGAAAATCAATAAAAAGGTTGGATACAATAAGGAGCAGATGACCCAGATCACACACAACTGGAAGATAGCTGCATCAGTCTCGAATGAATCTGGAGACCTTGCAGGGTTAATTGCGAAGTGTCAGTTCTCCTTTTCTGCAGAATATGGAGGTTCTCATGTCAGCACTGAAAATGAAAGCTGGAATGAAATGACTGAAGTGGAAGAACAACTCACATTTGAGCTGAAGCCACAAGAGCGTTTATATCTGTGGCAGTACAGAATGGGTCTTGGTAAAGAACAAGTGTTGTTCTGCCGTGATTTAAAGATTGACGATGATCCAAACCCTCCAACTGAAGTCCCGCTGCCACCTGCACAATAATGAAAACATATCAGGATGCTTTAACTCCAAGGATAATCAAGTGCTTCAGTTAAATGCCTTAATTATAACTTCTCTAGTAATTATTTAGATATCTTTATGCATTGCTTAAAATGAGGCTGGAATTGTTTAATATAGCAAAGAGATTTTTCAGTTACAGTCAATGTAACTACAAATTACAACAATATCCATTATGGTGTTATTGAAACTTTGTGTTTATGATTAAAAGAAACTGACAGAATCCTACTTTAATTTTCATCAAATGCAGATCTTTCAATATGGTGGCTAAATTGGGCTTTGGGGAAAGTTTTGCTAGAAAAAAAATGGGGGCTTAATGTATATTATTGTAGATGTAGTCAGACATTTTCATATTGTAACCGAAGTCTACTGAAGTTTTTGATTCACAATTCATAAAAAGCGCTGCATTCTGTACTCATTATACATTTGGTGTATACAAGCAGGCCCGGCTCCAGCTTTGAGATGTAAGGTGGGCCAAGTGAAATTCCTGGTGGGCCCAGAGTTTTAACATTATTTTATTTTTTTCCCCAAACAAAACTTTATTTTATAACAAAAGAGGCAGGTCTTGAAAGGGAATCTTTATATTTACAGGGCTCAATTCAAAGGAGCTTTTCTACAGGTCATTCTGGTTCAGATTTTTACTTGCCCTGCAAAAATTTTCACTAGCCCCACCACACACACAAAATATTTTTTTTTAGTATTTAAAGAAATATAAAGACAAGTAAACAGTCAGTAATAAAATAAGAACAAATTACAAGCAATAGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580928 lncRNA downstream 75016 125482 ~ 125723 (+) True G506678
TU580929 lncRNA downstream 99808 150274 ~ 150637 (+) False G506679
TU580930 lncRNA downstream 99808 150274 ~ 150659 (+) True G506679
TU580905 lncRNA downstream 112173 162639 ~ 166302 (+) True G506655
TU580944 lncRNA downstream 127324 177790 ~ 180852 (+) False G506680
CI01000350_00014076_00015551.mRNA mRNA upstream 32529 14076 ~ 15914 (+) True CI01000350_00014076_00015551
CI01000350_00095230_00102190.mRNA mRNA downstream 44764 95230 ~ 102574 (+) True CI01000350_00095230_00102190
CI01000350_00110973_00120683.mRNA mRNA downstream 58432 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00133984_00139525.mRNA mRNA downstream 83518 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00140280_00143769.mRNA mRNA downstream 89687 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00146107_00147209.mRNA mRNA downstream 95450 145916 ~ 147275 (+) True CI01000350_00146107_00147209
TU581079 other downstream 448630 499096 ~ 500756 (+) True G506786
TU581251 other downstream 714844 765310 ~ 766111 (+) True G506911
TU581186 other downstream 927625 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1404097 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1404420 1455782 ~ 1455902 (+) False G507676

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00012305 True 912 mRNA 0.41 3 CM030138.1 15396352 ~ 15397381 (+)