RNA id: CI01000350_00095230_00102190.mRNA


Basic Information

Item Value
RNA id CI01000350_00095230_00102190.mRNA
length 2928
RNA type mRNA
GC content 0.43
exon number 5
gene id CI01000350_00095230_00102190
representative True

Chromosome Information

Item Value
chromosome id CI01000350
NCBI id null
chromosome length 2572209
location 95230 ~ 102574 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTCTCGTCCTTATGCTGCAGTCACAAGGGCTGGGCAAAATCCCTATCATCAGTCGTATCTGAGTTGGGCAACACGTGGCGCCAGCAACCAGTGTGCCGAGGCAGATACAGACAACCAGATAAGAGATGCTATTCTTAGCAAATGCACGTCAGATTATGTTCGTCGGAAATTATTAGAGGAAGGTCTGAGTCTAACACTTGCTCGCTCAGTGGAACTAGCATCACAGCGTGAGAGAATTGAAGAGCAGATGTCAGTCATGTCATTGAAACCTGATACGGGTACAGTCAATCGAGTGGCGCCAAAGAGAGACAAAAGAGAGAAAGGAAATAAAGGATACACCAGAAACAGACATGCAGAGAGAAAAGATGAAAAAATGGACAGGAAATGTTACAGATGTGGACACAAAGATCATTTTGGCAGAGACCAAACATGCCCTGCACGAGGTCAAGTATGCCACAAACGTAATGGAAAAGACCATTTTTCAAAAATGTGTCAAACGAAAAATCCAAAAAAGAATCATGTAAATAATATGGAGGAAGCTGATCATGCATTTGTCGTCCAGGAGAATACCATGTCAGAGAAACTGACTTTCCTTGTGGGTGGTGTGAAACTAAGACTGTTGATCGACTCGGGTGCCACAAATAATGTGATTGATGAGGAAACCTGGGAAAATCTCAAACAGAACAAAGTTAAATGCAAGTCATACATTCCTGAAACAGAGAGAAAGCTCTCCCCATACTCTTCAAACCAACCACTAGCAGTCAAGGGTGCGTTCCAATGCGAGGTGAACATATCCAACAAAACGGAACAGGCTGAATTCATCGTGATACAAGGAAAAGGAGAACCCCTCTTAGGACGAGAGACAGCTATCAAGCTGGGAGTGTTAAAAATAGGCGCTGACATCTCCGCCGTGACTGAAATAAAGCAAGCACTGCAACAAAACAATGGGGTTGGCAAGCTAAATATGAACCAAGTTACCCTACACATAGACCCAAGTGTGAGACCAGTAGCGCAGCCGCTCAGACGTATCCCGTTTCATCTCAGGAAAGCAGTAGAGCGGAAAATAAAGGAACTAATGGACATGGATATCATTGAACCTGTCAGTGGTCCCACACCATGGGTGAATCCTGTAGGCATTGTGCCTAAGGCAAACTCAGAAATAAGATTATGTCTGGACATGAGGCAGGCTAACTGTGCCATAGTGAGGGAGTGTTACACTATCCCTACTGTGGATGAGATTCTCCAAGGCATCAATGGCTCAACTATATTCAGCAAGCTGGATTTAAAATGGGATCCACTACGACGTTTAACAAAAAAGGAGACACACTTTGAGTTTGGGCCTGAACAAAGACGATCGTTCAATGCACTGAAAGAAGAACTGGCCAGAGCAAGCACATTGGCATACTTTGATATAGATGCACCAACCAAAGTGATTGCAGATGCAAGCCCAGTGGGGCTGGGAGCTGTCTTAGTTCAGACCCAAAAAGGGGCGACGGTACCAATATGTTATCTGAGTCGCTGTCTAACAGACTGTGAGCACAGATATTCACAGACAGAAAAAGAGGCCCTGGCTCTTGTGTGGGCATGTGATAGACTGCATGCTTACATTTATGGCCGAGAATTTGAGCTGGTCACTGACCACAAACCGCTAGAAGCCATATACAGTCCCCGCTCCAAACCCTGTGCCCGGATAGAAAGATGGGTACTTCGACTACAGCCATACAACTTCAGGGTCACATACCTACCAGGCAGGCAGAACATTGCAGACTCGCTGTCAAGACTGTTGGGTGAAACATCAAAAGCTGTAAGACATATACACAATTCAGAAGAATATGTCAGGTTTATCACAGTGAGTGCAACGCCTAATGCTTTGACCACTAGAGAGAGCAACAGCATCAGACATGTCAACACCACTCCCAAATGGGCTCAGGCTAATGGGGAGGTAGAACGCCAGAACTCATCGCTAATGAAAAGAATCCGAATTGCACAGGCTGAGAGACTTGATTGGAAAAAAGAGCTGAGAAAATATGTCACTGTGTATAGAAGAAGATTCAGGGAAAGTTACCCAACCTTTCAGAAGCATGTAAAGATCAAGAAGTATGTGACAGAGATGCAGAACAAAAAAGCAAAGGCAAAAAGATATGCAGATGACCGTCGGGGAGCACAATACTCGAATGTGAATGTAGGTGACACAGTGCTTGTGCAACAGGAAAAGGTGGATAAATTCACGACTCCATTTAACCCAATCCTGCACCAAGTCGTGAGCAAAACTGGAAACCAAGTGACTGTGGAATCACCCACTGGGGCAAGATACACGCGAAACACCACTTACGTCAAACGATTCAACACCCGTGAAACTGTTGATGCAAAAACTGAATGCGAACAGATAGACCAGAACGAAAAGAGCTGTTGTCCTGACCCCAAATCTCATGTTCTGAACCCCAAAATGCATTTGTCAGACAGATCTAAAAAGGACAGACCCAACTGGACTAGACGATTGCCTGAGAAATTGTCTGATTATGTCATGAACTGGAAGGAATAACTGCTATAGATGTAGGCTGTTCAACCACAGAAAAGGGGGGAAATATCAACTAAATAACTGGCCTACATGTTTGGATGTTTTCACAAAATATCGTTTGTTAGTATGTTTATTGTGGAAAAGGAAATATTATTAATTATAAGTGGTTGAAGAAGTTTATGAGATGTTCTTTGAGTAATTATATAAGTTAGTTTTGGACATGTTCAGTTGATTAATTAATGTAATTTTGCATCCAAGAAAAGGGGGGATGTTATGTATCAGGATTACTGGGGTTGTTTCCAGTATTGGTCACTAGAGGGCGCTGTTACTTGTAAAGAAGTTGATGTAAAACTCTTCAGTAAAACAGAGTGGAAGCCACAAGTCGTGTGTGTTGGTGTGTTCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580928 lncRNA downstream 22908 125482 ~ 125723 (+) True G506678
TU580929 lncRNA downstream 47700 150274 ~ 150637 (+) False G506679
TU580930 lncRNA downstream 47700 150274 ~ 150659 (+) True G506679
TU580905 lncRNA downstream 60065 162639 ~ 166302 (+) True G506655
TU580944 lncRNA downstream 75216 177790 ~ 180852 (+) False G506680
CI01000350_00048651_00049682.mRNA mRNA upstream 44764 48443 ~ 50466 (+) True CI01000350_00048651_00049682
CI01000350_00014076_00015551.mRNA mRNA upstream 79316 14076 ~ 15914 (+) True CI01000350_00014076_00015551
CI01000350_00110973_00120683.mRNA mRNA downstream 6324 108898 ~ 120683 (+) True CI01000350_00110973_00120683
CI01000350_00133984_00139525.mRNA mRNA downstream 31410 133984 ~ 139964 (+) True CI01000350_00133984_00139525
CI01000350_00140280_00143769.mRNA mRNA downstream 37579 140153 ~ 143804 (+) True CI01000350_00140280_00143769
CI01000350_00146107_00147209.mRNA mRNA downstream 43342 145916 ~ 147275 (+) True CI01000350_00146107_00147209
CI01000350_00249103_00250406.mRNA mRNA downstream 146529 249103 ~ 250628 (+) True CI01000350_00249103_00250406
TU581079 other downstream 396522 499096 ~ 500756 (+) True G506786
TU581251 other downstream 662736 765310 ~ 766111 (+) True G506911
TU581186 other downstream 875517 978091 ~ 978891 (+) True G506858
TU582195 other downstream 1351989 1455782 ~ 1455902 (+) False G507676
TU582194 other downstream 1352312 1455782 ~ 1455902 (+) False G507676

Expression Profile